PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr011563.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 259aa MW: 27813.4 Da PI: 7.8888

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr011563.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.3	8.5e-41	65	164	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C+++C+++pyf ++p+kf +vhk+FGasnv+k+l ++ e++r da++slvyeA r+rdPv+G++gvil+l+qq+++l+ael++++ Pbr011563.1 65 PCAACKLLRRRCTEECPFSPYFSPHEPQKFSAVHKVFGASNVSKMLMEVAENQRADAANSLVYEATLRLRDPVSGCMGVILALHQQVQSLQAELNAVR 162 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Pbr011563.1 163 TE 164 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.388	64	165	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-40	65	162	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSTNREITTL DETGKKIRRE SDASVDDQMG IMSTTRISSS SSSSFGVPHQ GMMMMSTTTL 60 NTITPCAACK LLRRRCTEEC PFSPYFSPHE PQKFSAVHKV FGASNVSKML MEVAENQRAD 120 AANSLVYEAT LRLRDPVSGC MGVILALHQQ VQSLQAELNA VRTEILRYKY KEATSRSVVS 180 PRGIIHDSAL VSNSGMVSIA AQPQAISPPL PPPLPPASAP SSVVFSSSSS SSASTVYNPS 240 TNTTGYSSMS SENIPYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-42	58	172	4	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-42	58	172	4	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr011563.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369547.1	0.0	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q9AT61	3e-68	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A498IU99	1e-149	A0A498IU99_MALDO; Uncharacterized protein
STRING	XP_009369547.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	8e-70	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]