PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr011488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 325aa MW: 36317.5 Da PI: 4.4654 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.6e-19 | 89 | 142 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F ++++ e++ LAk lgL+ rqV +WFqNrRa++k Pbr011488.1 89 KKRRLTADQVQFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWK 142 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.8 | 1.1e-41 | 89 | 179 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl+++qv++LE+sF+ e+kLeperKv la++Lglqprqva+WFqnrRAR+ktkqlEkdye L+++y++lk++ e+L+ke+++L++e++ Pbr011488.1 89 KKRRLTADQVQFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEELQANYNNLKADCESLSKENDKLKAEVT 179 9**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.28E-19 | 78 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 84 | 144 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-18 | 86 | 148 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.88E-16 | 87 | 145 | No hit | No description |
Pfam | PF00046 | 2.7E-16 | 89 | 142 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 91 | 151 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.5E-5 | 115 | 124 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 119 | 142 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.5E-5 | 124 | 140 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-14 | 144 | 185 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MSGGRVYGGG SSSGLSALFQ NQRGSERLDS LFLSGSSNSS SASFLGSRSM VSFEDVRGGS 60 GSNRSLFRQY EHEDNGDDDL DEYLHQPGKK RRLTADQVQF LEKSFDVENK LEPERKVLLA 120 KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY EELQANYNNL KADCESLSKE NDKLKAEVTV 180 LSDKLHLKEK EGGNSELSDT NRLSQEPPQK PIADTVSEGE VSKVSAVASK QEDLSSGRSD 240 IFDSDSSHYT DAVHSSLLEP GDSSYAFEPE QSDLSQDEED NFTKSLLPPY IFPKIEDVDY 300 SDTPANSCNY AFPVEDHAFW SWSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 9 | GGRVYGGG |
2 | 136 | 144 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr011488.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009369353.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | D9ZJ06 | 0.0 | D9ZJ06_MALDO; HD domain class transcription factor | ||||
STRING | XP_009369353.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-43 | homeobox 1 |