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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr011351.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 31703.2 Da PI: 6.7488 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.4e-09 | 9 | 55 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+eE + + a +++ + +W+++a++++ g+t+ +++ +q++ Pbr011351.1 9 EWTKEENKMFESALAMFDEKtpdRWRKVAEMIP-GKTEIDVIKQYQDL 55 6********************************.***********986 PP | |||||||
2 | Myb_DNA-binding | 41.9 | 2.4e-13 | 112 | 156 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r ++t+ q+ s+ qky Pbr011351.1 112 PWTPEEHRRFLLGLLKHGKGDWRNISRNYVVTKTPTQVASHAQKY 156 7*****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.4E-6 | 6 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.18E-12 | 8 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.713 | 8 | 56 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 7.1E-8 | 9 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 9 | 52 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-7 | 9 | 55 | No hit | No description |
PROSITE profile | PS51294 | 17.702 | 104 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.45E-16 | 107 | 161 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-16 | 108 | 160 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.4E-9 | 109 | 159 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 110 | 156 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-11 | 112 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.27E-9 | 112 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MADYDWYSEW TKEENKMFES ALAMFDEKTP DRWRKVAEMI PGKTEIDVIK QYQDLEEDVC 60 EIESGRFPIP PGYPQSYFTL ELGDDRDFDA NRKRPAKAAA RGSDQERKKG IPWTPEEHRR 120 FLLGLLKHGK GDWRNISRNY VVTKTPTQVA SHAQKYFMRQ HSGGKDKRRP SIHDITTVNL 180 TSNTPPETNG SPSDQSPPEQ KSTESPNVLL DWNAADDGGA AMVFGSTHGN LLDPSPYDGP 240 ADGIKMQFQK LYSHAHYAAH ATPQNSLYLR QSARHQIHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-13 | 10 | 70 | 11 | 71 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr011351.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009350979.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 3e-83 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A498JIC3 | 0.0 | A0A498JIC3_MALDO; Uncharacterized protein | ||||
STRING | XP_009350979.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 1e-78 | MYB family protein |
Publications ? help Back to Top | |||
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