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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr011157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | SRS | ||||||||
Protein Properties | Length: 169aa MW: 16907.3 Da PI: 6.9545 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 98 | 1.8e-30 | 12 | 109 | 66 | 153 |
DUF702 66 sa.aeaaskrkrelkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 ++ +++++k++r ++q+++s+t++s+++++++ +tss lP +v+++avf+cvrv++v+dge+e+aYq++v+i+GhvfkG+LydqG+ Pbr011157.1 12 NSgSTSSAKKPRL-IGASQTTTSHTSTSNTTPPRSYDTSSshqdagfkdpLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKINGHVFKGFLYDQGV 108 3325556666665.58899999****************999********************************************************9 PP DUF702 153 e 153 + Pbr011157.1 109 D 109 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.6E-26 | 12 | 109 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.0E-29 | 61 | 108 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MSAAAGGGAG SNSGSTSSAK KPRLIGASQT TTSHTSTSNT TPPRSYDTSS SHQDAGFKDP 60 LPGQVRAPAV FKCVRVTAVE DGEDEYAYQA VVKINGHVFK GFLYDQGVDG RDGFPNISEL 120 HLGGGGGTSS GGNGRRNAAS SPILDPSDVY AASGAGLLGG SNFGNPIN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr011157.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018505845.1 | 1e-115 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 6e-49 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A498KCA6 | 4e-85 | A0A498KCA6_MALDO; Uncharacterized protein | ||||
STRING | XP_009369677.1 | 1e-114 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6504 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 8e-42 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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