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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr011082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 273aa MW: 31313.5 Da PI: 6.2368 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.3 | 8.8e-51 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF P+deelv++yL kk+++++ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ v++ +g Pbr011082.1 10 LPPGFRFYPSDEELVCHYLYKKITNEEALK-GTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRMVMEPgTG 106 79***********************99544.78***************88888999**************************************9888 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 e vg++ktLvfy++rap+g kt W+mhe+rle Pbr011082.1 107 EIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 99***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-61 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.306 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KITNEEALKG TLVEIDLHTC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRMV MEPGTGEIVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKGKGA ENSTKLSPHE LMLETTPCTV 180 PLNLAPSPPT HDQTMPCVYN HNQSNSFLNL LQLSHQEKYT NSSIPELNAK NNCDYGFLWD 240 MNLEDGSFDN EVAPNLDEMR FEVDGTAWFC SK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-48 | 9 | 162 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-48 | 9 | 162 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr011082.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF198122 | 0.0 | KF198122.1 Malus hupehensis NAC domain protein (NAC86) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008382854.2 | 0.0 | LOW QUALITY PROTEIN: protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q84TE6 | 1e-62 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A498IY70 | 0.0 | A0A498IY70_MALDO; Uncharacterized protein | ||||
STRING | XP_008382854.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-92 | NAC domain containing protein 74 |