|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pbr011082.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
Family |
NAC |
Protein Properties |
Length: 273aa MW: 31313.5 Da PI: 6.2368 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pbr011082.1 | genome | CPETR | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 163.3 | 8.8e-51 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97
lppGfrF P+deelv++yL kk+++++ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ v++ +g
Pbr011082.1 10 LPPGFRFYPSDEELVCHYLYKKITNEEALK-GTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRMVMEPgTG 106
79***********************99544.78***************88888999**************************************9888 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129
e vg++ktLvfy++rap+g kt W+mhe+rle
Pbr011082.1 107 EIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
99***************************985 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KITNEEALKG TLVEIDLHTC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRMV MEPGTGEIVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKGKGA ENSTKLSPHE LMLETTPCTV 180 PLNLAPSPPT HDQTMPCVYN HNQSNSFLNL LQLSHQEKYT NSSIPELNAK NNCDYGFLWD 240 MNLEDGSFDN EVAPNLDEMR FEVDGTAWFC SK*
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 9e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-48 | 9 | 162 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-48 | 9 | 162 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by auxin. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KF198122 | 0.0 | KF198122.1 Malus hupehensis NAC domain protein (NAC86) mRNA, complete cds. |
Publications
? help Back to Top |
- Le Hénanff G, et al.
Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Huo X,Wang C,Teng Y,Liu X
Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] - Chen X, et al.
Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] - Liu C,Wang B,Li Z,Peng Z,Zhang J
TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]
|