PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr010943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 18994.6 Da PI: 6.2195 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.8 | 5e-45 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+kdC++apyfp+++p+kf +vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+++ Pbr010943.1 6 PCASCKLLRRRCTKDCIFAPYFPSDDPHKFVIVHKVFGASNVSKMLQELPAHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSELQMQLAVVQ 103 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Pbr010943.1 104 AE 105 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.021 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-44 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MPGTSPCASC KLLRRRCTKD CIFAPYFPSD DPHKFVIVHK VFGASNVSKM LQELPAHQRA 60 DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSELQMQLA VVQAEILCTQ MQHEPMVPTP 120 QQIMDDPDDQ KSYFLQNNNL GQYLSFPSSS NVIHDSLQRE NIFGHDMVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-47 | 2 | 107 | 6 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-47 | 2 | 107 | 6 | 112 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr010943.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009369215.1 | 1e-125 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 2e-75 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A498JLL1 | 1e-118 | A0A498JLL1_MALDO; Uncharacterized protein | ||||
STRING | XP_009369215.1 | 1e-124 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 7e-78 | LBD family protein |
Publications ? help Back to Top | |||
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