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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pbr010922.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 285aa MW: 31007.2 Da PI: 8.3322 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 37.7 | 3.8e-12 | 95 | 141 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h ++E+rRRdri +++Lr+l+Pk+ K++Ka+ L +++++k+L
Pbr010922.1 95 KSHRQAEKRRRDRISAQLATLRKLVPKS-----DKMDKAALLGSVIDHVKEL 141
79*************************8.....7****************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.57E-12 | 90 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 14.932 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 7.59E-11 | 95 | 144 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 7.1E-10 | 95 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 3.6E-10 | 98 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd04873 | 5.82E-4 | 191 | 239 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 285 aa Download sequence Send to blast |
MDHNCCYAGT GRVSWPQQYK SGAVPAAAAV SNESSSSFLV PWPPPPPHVS STNQFQFCGL 60 PPNSWSLTAG DGFGDWWSWA AADGFEDDRD ASASKSHRQA EKRRRDRISA QLATLRKLVP 120 KSDKMDKAAL LGSVIDHVKE LKRKAVEVSE AFIVPTEVDE VTIDCDSAHG VTSTTTSNTN 180 INRGNFLITA SVCCDDRPEL FSELIQILKG LKLTALRAEM ASVGGRIKSV LVLCSKDGEE 240 AVCLSTLKQS LKLVLSKLAA SPVAPNCRIR SKRQRFFFPF HDPN* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Pbr010922.1 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009369194.1 | 0.0 | PREDICTED: transcription factor bHLH51-like | ||||
| TrEMBL | A0A498JFP8 | 1e-162 | A0A498JFP8_MALDO; Uncharacterized protein | ||||
| STRING | XP_009369194.1 | 0.0 | (Pyrus x bretschneideri) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5796 | 33 | 51 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G40200.1 | 3e-41 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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