PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010904.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-X1
Protein Properties Length: 866aa    MW: 96530 Da    PI: 8.4884
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010904.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.16.8e-07231249119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG+H+C+++CH GpC pC+
  Pbr010904.1 231 CGIHRCSEICHQGPCSPCR 249
                  ******************6 PP
2zf-NF-X118.44.9e-06285303119
     zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                  CG+HkC k CH+G+C+pCp
  Pbr010904.1 285 CGQHKCTKGCHLGECGPCP 303
                  ******************9 PP
3zf-NF-X118.16e-06392411120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG+H C++ C+ G+CppC++
  Pbr010904.1 392 CGRHACKRRCCDGDCPPCSE 411
                  ******************85 PP
4zf-NF-X116.12.5e-05413437119
     zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                  CG      +HkC ++CH+G C pCp
  Pbr010904.1 413 CGrklrcrNHKCPSPCHRGACAPCP 437
                  777777779***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.36E-661138No hitNo description
PROSITE patternPS01359066132IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.32E-6167215No hitNo description
PfamPF014220.07179196IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072179197IPR000967Zinc finger, NF-X1-type
CDDcd060081.73E-6221259No hitNo description
PfamPF014221.9E-5231249IPR000967Zinc finger, NF-X1-type
SMARTSM004384.8E-4231250IPR000967Zinc finger, NF-X1-type
CDDcd060083.67E-9275315No hitNo description
PfamPF014220.006285303IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0059285304IPR000967Zinc finger, NF-X1-type
CDDcd060083.47E-9329378No hitNo description
PfamPF014220.0025339358IPR000967Zinc finger, NF-X1-type
SMARTSM004380.042339359IPR000967Zinc finger, NF-X1-type
CDDcd060089.24E-8382430No hitNo description
PfamPF014228.4E-4392410IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092392411IPR000967Zinc finger, NF-X1-type
CDDcd060084.23E-11409457No hitNo description
PfamPF014220.0061413437IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0061419438IPR000967Zinc finger, NF-X1-type
SMARTSM00438100476497IPR000967Zinc finger, NF-X1-type
PfamPF01422110486496IPR000967Zinc finger, NF-X1-type
PfamPF0142275505514IPR000967Zinc finger, NF-X1-type
SMARTSM0043871505550IPR000967Zinc finger, NF-X1-type
PfamPF014220.17587598IPR000967Zinc finger, NF-X1-type
SMARTSM004381.2587620IPR000967Zinc finger, NF-X1-type
SMARTSM004380.027630648IPR000967Zinc finger, NF-X1-type
PfamPF014220.58632647IPR000967Zinc finger, NF-X1-type
SMARTSM0043814693714IPR000967Zinc finger, NF-X1-type
PfamPF014226695712IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MPSNHSDSDT DSDQSQSGSG PVRHSDLSDS IFRTYLEFTG KSTATTADLS KIQSFLTSSS  60
SGALSCLICL ERIRPADPTW SCNSVCFSVF HLICIQSWAR QASDLSALRA STRLPISAQK  120
AAEVSVWNCP KCRIEYPHSQ IPKNYYCFCG KLENPPSDDP WILPHSCGEV CNRPLKHGCG  180
HHCLLLCHPG PCPSCPKLVE ARCFCGSVKD VRRCGFKHFS CNNACKKVLA CGIHRCSEIC  240
HQGPCSPCRV RGVYRCQCGK KKEEKECCER LDFRCEEPCE KVLGCGQHKC TKGCHLGECG  300
PCPSQGKRTC PCGKRMHEGL SCKASVPLCG STCDKMLSCG YHRCPERCHR GECIETCRTV  360
VIKSCRCGSL KKEVPCHQDL ACERKCQRLR DCGRHACKRR CCDGDCPPCS EICGRKLRCR  420
NHKCPSPCHR GACAPCPVMV TITCACGQTH FEVPCGTEMD QKPPRCRKPC PITPLCRHGP  480
NSKPHKCHYG ACHPCRLLCE EEYPCGHKCK LRCHGPKPPP NPEFTLKPKR KKSFHQSAST  540
PGSPCPPCPE LVWRSCVGQH IGADKMMVCS DNTLFSCENL CGNPLPCGNH FCTKTCHPLK  600
NQTVPSVRQA RSEPCEKCQL PCKKEREPAC PHPCPLPCHP GDCPPCKVLV KRSCHCGSMV  660
HVFECIYFNS LSEKEQMTAR SCKGPCHRKL PYCTHLCPEI CHPGQCSSPE KCSKKVTVRC  720
GCQSLKKEWL CHNVQAAYRD AGSDPKDVSK NQFGLGLIPC NSDCKSKQKV NDSELQLRRP  780
KSVEVKESDN DRQGPKRKKR RERVQQVTQT STLQKIISNV KRCLLVFTLL VVLAAVSYYG  840
YKGLLRLNDW MNEVEENRQR RYPRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1794800PKRKKRR
2796802RKKRRER
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010904.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369168.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
RefseqXP_009369169.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A498JHU00.0A0A498JHU0_MALDO; Uncharacterized protein
STRINGXP_009369168.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors