PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010843.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 435aa    MW: 48534.8 Da    PI: 5.2618
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010843.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.51.6e-29244302259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++++ve+s+++p+++++tY+g+H+h 
  Pbr010843.1 244 ADLWAWRKYGQKPIKGSPHPRNYYRCSSSkGCPARRQVEQSTTEPNIFIVTYTGDHTHA 302
                  699************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-30229304IPR003657WRKY domain
PROSITE profilePS5081130.79238304IPR003657WRKY domain
SuperFamilySSF1182902.09E-25241304IPR003657WRKY domain
SMARTSM007743.7E-36243303IPR003657WRKY domain
PfamPF031062.3E-25245301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MADDWDLYAV VRGCKSTNQT TRNITITATG IAPTNPIHTP PDEFENDPFW ELLDSDELTD  60
QLFSFTNLDD PKEASGFQEL QQSFFRNPTT TTNNDHNPTT NNTTFGPNNI IPNSPTISDF  120
GGSSGSGQHH LQHQQQQQQQ HHAQLQQQQL QQQQHLSMPT RFTRGIPAPG FRGIYGQQQQ  180
QQIIQPGDQN LQPEQLQTQQ GFRRPRFINP AYPHPPLPTR PQRRRKTQQK KNVHEVKAED  240
LISADLWAWR KYGQKPIKGS PHPRNYYRCS SSKGCPARRQ VEQSTTEPNI FIVTYTGDHT  300
HARPTHRNSL AGSSRNKLSA ASASQNQPIN NDSGSTAVPN PSSPTTGLPM TVQAEAVPVA  360
NKVNSDNSLD KENEEFDEEE ETDHENENEN EVEDDDVVIP DMDMSDEIFL GLKELGGTSS  420
NGTGSGSFSG LCFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-162443051780Disease resistance protein RRS1
5w3x_D1e-162443051780Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221226QRRRKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010843.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505612.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A498JJR00.0A0A498JJR0_MALDO; Uncharacterized protein
STRINGXP_009377624.11e-138(Pyrus x bretschneideri)
STRINGXP_009377627.11e-138(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1888326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.18e-42WRKY DNA-binding protein 27