PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Cis-element |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Pbr010789.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 204aa MW: 23270.9 Da PI: 6.7506

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr010789.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.9	1.5e-26	89	136	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++l++++kyF+ pi++AAkeL+v+lTvLKr+CR+++I+RWPhRkiksl Pbr010789.1 89 LELDEIQKYFDVPITQAAKELKVGLTVLKRRCRELNIMRWPHRKIKSL 136 7899******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.881	67	157	IPR003035	RWP-RK domain
Pfam	PF02042	6.4E-24	89	136	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MGSQDFEDSG IWDYILNDAA FPSPFGYEVV DEKPLTTMAE SVDCSNSVSG DSDDVLRTIE 60 LGMKIWGKDE DESRTKNESC CKKRCGTPLE LDEIQKYFDV PITQAAKELK VGLTVLKRRC 120 RELNIMRWPH RKIKSLNALI ENVKGMGLTN DVMMLEEHKR VLQQMPDMEL PERAKRLRQA 180 CFKTNYKKKR ALCLTALPVH DLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr010789.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009368769.1	1e-151	PREDICTED: protein RKD4-like
Swissprot	Q9LVU8	2e-40	RKD4_ARATH; Protein RKD4
TrEMBL	A0A498JJF8	1e-139	A0A498JJF8_MALDO; Uncharacterized protein
STRING	XP_009368769.1	1e-150	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	9e-43	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]