![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr010651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 153aa MW: 17001 Da PI: 7.9181 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 182.3 | 2.7e-56 | 6 | 150 | 4 | 159 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 + ++eq+Cy+ CnfC+ +lavsvP +slf +vtvrCG Ct+l svn+a a q l+ ++ ++++ + +++n++ ++++ ++++++ Pbr010651.1 6 DVATEQLCYIPCNFCSIVLAVSVPCSSLFDIVTVRCGRCTNLWSVNMAAAFQSLSWQDV--------QAQNYNCNSQNYRIDSGSSSKCNKKNAT--- 92 5689*********************************************9999999985........5566666666665554444333333333... PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 + +++++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aakn Pbr010651.1 93 RDPTSDHATEERGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 150 22333333334569*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.3E-60 | 8 | 150 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.4E-6 | 106 | 147 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 3.21E-4 | 115 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 153 aa Download sequence Send to blast |
MTSCVDVATE QLCYIPCNFC SIVLAVSVPC SSLFDIVTVR CGRCTNLWSV NMAAAFQSLS 60 WQDVQAQNYN CNSQNYRIDS GSSSKCNKKN ATRDPTSDHA TEERGVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN DP* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr010651.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009368867.1 | 1e-108 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 2e-68 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | D9ZJG6 | 1e-102 | D9ZJG6_MALDO; YABBY domain class transcription factor | ||||
STRING | XP_009368867.1 | 1e-108 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 9e-71 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|