PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010595.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 309aa    MW: 34684.9 Da    PI: 8.3239
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010595.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.7e-095478126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ykt+lC +f   G C+ G++C++aHg
  Pbr010595.1 54 YKTRLCVNFKS-GMCRNGENCNYAHG 78
                 9********99.*************8 PP
2zf-CCCH28.62.5e-09116138325
                  S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                  ++lC+ f+ + +C+yGdrC+F H
  Pbr010595.1 116 MKLCKKFYNGEECPYGDRCNFLH 138
                  689******66************ PP
3zf-CCCH38.61.8e-12197222126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ +  tG C++ ++C+FaHg
  Pbr010595.1 197 WKTKLCNKWETTGKCPFSEKCHFAHG 222
                  8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-135186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-85284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0515380IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-65379IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-55478IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4113140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-7113140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117113141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-9116139IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-7116138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-16192228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-10193227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295196224IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5196223IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9197222IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNNDDQHSQV EQQPFKRARN SEERQSNPMP YPPMNYRVQQ PSAPVNKGAS NIFYKTRLCV  60
NFKSGMCRNG ENCNYAHGIE DIRHPPPNWQ ELVSIRDEDR PLSGNWDDDQ KIIHRMKLCK  120
KFYNGEECPY GDRCNFLHED PSKFRDDSGR FRENTAISIG TTGAPVAHGS GSNPPEENRL  180
VNAGMDASRG NVKPVYWKTK LCNKWETTGK CPFSEKCHFA HGLTELQAPG GRTVEAEFLN  240
TPPLPIPQVV AAVNSSATAI AALPALNNDG GQRKKGMLKW KGSKKINRIY ADWLDDVPLV  300
HQHNLVES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010595.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009368819.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT816e-90C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A498KEG20.0A0A498KEG2_MALDO; Uncharacterized protein
STRINGXP_009368819.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-81C3H family protein