PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr010595.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 309aa MW: 34684.9 Da PI: 8.3239 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27 | 7.7e-09 | 54 | 78 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f G C+ G++C++aHg Pbr010595.1 54 YKTRLCVNFKS-GMCRNGENCNYAHG 78 9********99.*************8 PP | |||||||
2 | zf-CCCH | 28.6 | 2.5e-09 | 116 | 138 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H Pbr010595.1 116 MKLCKKFYNGEECPYGDRCNFLH 138 689******66************ PP | |||||||
3 | zf-CCCH | 38.6 | 1.8e-12 | 197 | 222 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ + tG C++ ++C+FaHg Pbr010595.1 197 WKTKLCNKWETTGKCPFSEKCHFAHG 222 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-13 | 51 | 86 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-8 | 52 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 53 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-5 | 54 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-4 | 113 | 140 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-7 | 113 | 140 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.117 | 113 | 141 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-9 | 116 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-7 | 116 | 138 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-16 | 192 | 228 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-10 | 193 | 227 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.295 | 196 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 196 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 197 | 222 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MNNDDQHSQV EQQPFKRARN SEERQSNPMP YPPMNYRVQQ PSAPVNKGAS NIFYKTRLCV 60 NFKSGMCRNG ENCNYAHGIE DIRHPPPNWQ ELVSIRDEDR PLSGNWDDDQ KIIHRMKLCK 120 KFYNGEECPY GDRCNFLHED PSKFRDDSGR FRENTAISIG TTGAPVAHGS GSNPPEENRL 180 VNAGMDASRG NVKPVYWKTK LCNKWETTGK CPFSEKCHFA HGLTELQAPG GRTVEAEFLN 240 TPPLPIPQVV AAVNSSATAI AALPALNNDG GQRKKGMLKW KGSKKINRIY ADWLDDVPLV 300 HQHNLVES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr010595.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009368819.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q9LT81 | 6e-90 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A498KEG2 | 0.0 | A0A498KEG2_MALDO; Uncharacterized protein | ||||
STRING | XP_009368819.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-81 | C3H family protein |