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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr010560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NF-YC | ||||||||
Protein Properties | Length: 255aa MW: 27705.3 Da PI: 5.2795 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.9 | 9.7e-56 | 49 | 153 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdi Pbr010560.1 49 QLQMFWTYQrheIESVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 146 89*****999999************************************************************************************* PP NF-YC 96 vprdelk 102 vprde+k Pbr010560.1 147 VPRDEIK 153 ****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.39E-33 | 48 | 143 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.8E-37 | 63 | 135 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.5E-21 | 71 | 134 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDPNPNSGAP TSAAAPTQQP PQAQSSPYGA TQSSVPALPF HHLLQQQQQL QMFWTYQRHE 60 IESVNDFKNH QLPLARIKKI MKADEDVRMI SAEAPVLFAK ACELFILELT IRSWLHAEEN 120 KRRTLQKNDI AAAITRTDIF DFLVDIVPRD EIKEEAVGLG GMVGATASGV PYYYPPMGQP 180 AGGPGGMMIG RPAVDPAGVY GVQPPSQAWQ SVWQTAADDG SYGSGGSSGQ GNLDGQRYCV 240 SYLSIEMWLL FGKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-54 | 57 | 149 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 127 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr010560.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-108 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009368534.1 | 1e-175 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 1e-105 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | M5WN84 | 1e-127 | M5WN84_PRUPE; Uncharacterized protein | ||||
STRING | XP_009368534.1 | 1e-174 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11071 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-85 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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