PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr010534.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 662aa MW: 73920.5 Da PI: 5.9446 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.5 | 4.3e-29 | 63 | 146 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r+em+ ++r+++ k+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++ t+++fdql+ Pbr010534.1 63 RWPRQETLALLRIRSEMDVAFRDASVKGPLWEEVSSKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLN 146 8********************************************************************975544..6******97 PP | |||||||
2 | trihelix | 100.6 | 1.3e-31 | 452 | 536 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++++++++++ k+plWee+s mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ l+ Pbr010534.1 452 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHLLD 536 8********************************************************************97.99*********987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.8E-4 | 60 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.2E-18 | 62 | 148 | No hit | No description |
PROSITE profile | PS50090 | 6.934 | 62 | 120 | IPR017877 | Myb-like domain |
CDD | cd12203 | 9.41E-24 | 62 | 127 | No hit | No description |
SMART | SM00717 | 0.0041 | 449 | 511 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.18E-28 | 451 | 516 | No hit | No description |
Pfam | PF13837 | 2.3E-21 | 451 | 538 | No hit | No description |
PROSITE profile | PS50090 | 6.98 | 451 | 509 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 662 aa Download sequence Send to blast |
MLGESTSVLG SSIGRDAAAA AVAAPEGGGG SGDGSNNNSG EETFRGGQEE LLGGGERSFG 60 GNRWPRQETL ALLRIRSEMD VAFRDASVKG PLWEEVSSKL AALGYHRSAK KCKEKFENVY 120 KYHRRTKEGR TGKSEGKTYR FFDQLNALEN QPPTPGNTTT HHQPKPHQST TVAAAATMTT 180 MAMANPPPTI SHLNSSTTVP SSAAPHPTIP TVSSQGIATP TLNNLTLPSS FPPTNPIVLP 240 PPPQPPPPQP TTTNPTSNLS YHHQQQHTAF PTIPTDLLSN SASSSTSSDE ELEGRAKKKR 300 KWKDFFERLM KDVIQKQEDL QKRFLETIEK REQERIVREE AWRMQEIARI NREHEILAQE 360 RSIKAAKDAA VMSFLQKVSE QHQNQNQNKN QSTPNQSQQL PLQPAPLPLP LRQPAPPPQA 420 QPQQKVTTFD IVPKSNNNGE NDNLMMPPSS SRWPKVEVQA LIKLRTSLDS KYQENGPKGP 480 LWEEISGGMR KLGYNRNAKR CKEKWENINK YFKKVKESNK RRPEDSKTCP YFHLLDSLYR 540 ERNNFDQNNV NSTSTTNSSS QFKPENSVPL MVRPEQQWPP EPPPHQQQDH QGLMMGTDHH 600 QNQGEDHHDQ QDKENNIGDD DDDEEDEEEE DEEEDDDDDE GDGNYEIVAN KPASVGAATA 660 E* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr010534.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JQ397646 | 0.0 | JQ397646.1 Malus zumi GTL mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009368512.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-146 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A498K1G7 | 0.0 | A0A498K1G7_MALDO; Uncharacterized protein | ||||
STRING | XP_009368512.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-96 | Trihelix family protein |