PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pbr010533.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 449aa MW: 51382.2 Da PI: 6.5125

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr010533.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.8	1.1e-26	122	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+q+v++Li+a+++++e+ ++++ +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d + Pbr010533.1 122 KWTDQMVKLLITAVSYIGEDTGSDCgsggrrkysvvQKKGKWKSVSKVMAERSYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDVI 218 7*******************99888999999999********************************************569999888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.0E-23	120	245	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MEGNLSQGGG GMVPGGASFG GLDLQGSMRG HHQTQHPHTI HHHLPHPHQG SLVHPSIPEG 60 FPLKMGTMHH CDQTISMVDY NKGERGKNSA SDEDEPSYAE DGADGHPEAS KGKKGSPWQR 120 VKWTDQMVKL LITAVSYIGE DTGSDCGSGG RRKYSVVQKK GKWKSVSKVM AERSYHVSPQ 180 QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPALLDVIEY LTEKEKDDVR KILSSKHLFY 240 EEMCSYHNGN RLHLPHDPAL QKSLQRALKR DDPDNDDLRR HHHDDLDEDD QDMENDEHED 300 FEENNALRGD NRGIYISEDS VKRLRQGQGR EDFNFGSSLN SQDSNKSSYS HPQILPQPDM 360 NQVLPDGTKA VWLQKQWVES RSFQLEEQKL QIQVEMLELE KQRLKWQRFS KKRDHELEKL 420 RLENERMKLE NERMILELKQ KEMGAGFS*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MEGNLSQGGG GMVPGGASFG GLDLQGSMRG HHQTQHPHTI HHHLPHPHQG SLVHPSIPEG  60
FPLKMGTMHH CDQTISMVDY NKGERGKNSA SDEDEPSYAE DGADGHPEAS KGKKGSPWQR  120
VKWTDQMVKL LITAVSYIGE DTGSDCGSGG RRKYSVVQKK GKWKSVSKVM AERSYHVSPQ  180
QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPALLDVIEY LTEKEKDDVR KILSSKHLFY  240
EEMCSYHNGN RLHLPHDPAL QKSLQRALKR DDPDNDDLRR HHHDDLDEDD QDMENDEHED  300
FEENNALRGD NRGIYISEDS VKRLRQGQGR EDFNFGSSLN SQDSNKSSYS HPQILPQPDM  360
NQVLPDGTKA VWLQKQWVES RSFQLEEQKL QIQVEMLELE KQRLKWQRFS KKRDHELEKL  420
RLENERMKLE NERMILELKQ KEMGAGFS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr010533.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009368513.1	0.0	PREDICTED: uncharacterized protein LOC103958014
TrEMBL	A0A498K2Z8	0.0	A0A498K2Z8_MALDO; Uncharacterized protein
STRING	XP_009368513.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	1e-120