PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010427.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family E2F/DP
Protein Properties Length: 684aa    MW: 76877.6 Da    PI: 6.7658
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010427.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.25e-27104169171
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  Pbr010427.1 104 RYDSSLGLLTKKFINLIKRAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 169
                  6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.6E-29101171IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-16104167IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.5E-34104169IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.5E-24106169IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.71E-46182286No hitNo description
SuperFamilySSF1440749.15E-33182286No hitNo description
PfamPF164218.7E-32185284IPR032198E2F transcription factor, CC-MB domain
TIGRFAMsTIGR015688.9E-19600662IPR006458Ovate protein family, C-terminal
PROSITE profilePS5175417.692602661IPR006458Ovate protein family, C-terminal
PfamPF048447.4E-21606662IPR006458Ovate protein family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MCCLIWSEGT DLEVDFQVVV FGSFLESIVA HGQLTRKDNN EVGYSDWTNS PGNTNVIQSP  60
LQTPVSAKGG RVNNRSKASK GGRSGPQTPV SIVGSPSTPA GSCRYDSSLG LLTKKFINLI  120
KRAEDGILDL NKAAETLEVQ KRRIYDITNV LEGIGLIEKK LKNRIRWKGF DASMPGELDG  180
DLSILQAEVE NLSSQERRFD DRIREMQEKL RDLSEDENNR KWLFVTEDDI KGLPCFHNET  240
LIAIKAPHGT TLEVPDPDEA VDYPQRRYRI ILRSTMGPID VYLVSQFEEK FEDVHGAEPP  300
VNFPIASGSG SNEHPTTEVV TVESSGKEIE PWLQQAHHAC SDMNASQEFA GGMMKIVPSD  360
VDNDADYWLL SDAEVSITDM WRTDLPYHAE CPLYGNDRIQ KHLVPHHDDK EATHQVHNPC  420
ILSGCKIVRL RSDCHRNRSQ DSHFSIQVTL QELTCRLYRE REIAPLPIHL VKSPHPNSQS  480
LPQLKTSLSL SLSLSLSKTH TMPTTTRRKL RLSKVTVDIG CGSCRKTSKL FQIFNPKPKP  540
SSKTLKHNHF HHPASSSSTP RNNYNKLYKD NDHAPFFVTD SNTKSTRPVN GFGRIGNESV  600
AVEKDSGDPY LDFRHSMLQM ILENEIYSKD DLRELLNCFL QLNSPCNHGI IIRVFTEIWN  660
AVFSVRSGDS TLLHFASNKS CDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-2496169273PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010427.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349221.10.0PREDICTED: transcription factor E2FA-like
TrEMBLM5W8E60.0M5W8E6_PRUPE; Uncharacterized protein
STRINGXP_009349217.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-147E2F transcription factor 3