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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr010321.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 258aa MW: 29192.2 Da PI: 8.4537 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.3 | 2.7e-10 | 10 | 51 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +en++ r+ f kR++ +l K eE+ +LC++++ i++++++ Pbr010321.1 10 VENDRARKDCFRKRKANLLRKMEEITTLCQVNAFAIVYGQDN 51 69*************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-8 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.72E-16 | 1 | 84 | No hit | No description |
PROSITE profile | PS50066 | 12.054 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-17 | 3 | 92 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-11 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGKKVKLAWV ENDRARKDCF RKRKANLLRK MEEITTLCQV NAFAIVYGQD NNDPTLWPTH 60 PEVEELIKRF FSIPNVKRYK KSLNQETYLL ERAVKFRERI KKINKQIREM KGNKLMHQVH 120 EGKSLNEFER SDMTDLVSFC KEKMYGIKKL VAHLEKEDLN SEQGTSNYEK GKDIENTAGN 180 IAANGIENSG DALGLGLMSH SGTGKEVGQP DVSHEMVKQS ENVTGKKGER IRLMGVAIEV 240 SSVADDDDAE DPLQHGN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr010321.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009349916.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL36 | ||||
TrEMBL | A0A498I2E6 | 1e-163 | A0A498I2E6_MALDO; Uncharacterized protein | ||||
STRING | XP_009349916.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11014 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 3e-28 | AGAMOUS-like 48 |