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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pbr010242.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family |
NAC |
Protein Properties |
Length: 371aa MW: 41928.5 Da PI: 7.456 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pbr010242.1 | genome | CPETR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 171.9 | 2e-53 | 11 | 141 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
+ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ +
Pbr010242.1 11 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLT 107
69****************************.9***************952444443456*************************************** PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
+++ +g++ktLvfy+grap+g+ktdW+mheyrle
Pbr010242.1 108 SSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 141
********************************85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0003002 | Biological Process | regionalization |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
GO:0010455 | Biological Process | positive regulation of cell fate commitment |
GO:0048829 | Biological Process | root cap development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 371 aa
Download sequence Send
to blast |
MMAAGNGQLT VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEKC 60 RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLTSSK RIGMRKTLVF 120 YTGRAPHGQK TDWIMHEYRL EDDNITADQV QQEDGWVVCR VFKKKNHNRG YQPEFAHHQD 180 HQDHDHFTNM KASGSHAPIV LDHHDYHQQK QNHHHLEGLY DYPGSFDHAG SMHLPQLFSP 240 ESAVAASSFV SPHNINLNTM DIQCSQNLLR LTSAAAAAAA AASGSCGLVQ QQERSFISGG 300 DWSFLDKVLA SHQNLDINHS TSQTKCNPSS STQQLSNSHD HDHVGTSSST QQRFPFQYLG 360 CGTDFLKFSK *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 5e-51 | 8 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-51 | 8 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-51 | 8 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-51 | 8 | 166 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-51 | 8 | 166 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-51 | 8 | 166 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Publications
? help Back to Top |
- Fendrych M, et al.
Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] - Bennett T,van den Toorn A,Willemsen V,Scheres B
Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] - Karve R,Suárez-Román F,Iyer-Pascuzzi AS
The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] - Kamiya M, et al.
Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]
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