PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr010171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 648aa MW: 71993.1 Da PI: 5.5031 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 65.8 | 9.3e-21 | 1 | 69 | 17 | 87 |
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 m+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f++lea Pbr010171.1 1 MDVAFRDATLKGPLWEDVSRKLAELGYQRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 69 567899************************************************866665..******985 PP | |||||||
2 | trihelix | 107 | 1.3e-33 | 397 | 482 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a Pbr010171.1 397 RWPKAEVLALIKLRSGLESRYQDAGPKGPLWEEISAGMGRMGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 482 8*********************************************************************8.99999********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 1.20E-16 | 1 | 49 | No hit | No description |
Pfam | PF13837 | 2.8E-15 | 5 | 70 | No hit | No description |
PROSITE profile | PS50090 | 4.623 | 15 | 42 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.306 | 390 | 454 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.3E-4 | 394 | 456 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.1E-23 | 396 | 483 | No hit | No description |
CDD | cd12203 | 2.68E-29 | 397 | 461 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 648 aa Download sequence Send to blast |
MDVAFRDATL KGPLWEDVSR KLAELGYQRN AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS 60 YKFFSELEAL HGTAATAAAT TANVLASPAV HVASPNPVSV GFGSVSNPMP ISSFRMPQQQ 120 QPPPATVIPI IPSSQPTATP MDFNFSSNSS STSPGTDDED DDDDVEGERS SRKRKRGSAS 180 TSTGISGGGS TRKMMNFFEV LMKQVMQKQE SMQQRFLEVI EKREQDRTIR EEAWKRQEMA 240 RLTREQELMS QERAISASRD AAIISFLQKI TGQTIQLPPP VNVQAAPPPP VPPSVSVVTP 300 LPQTTPQPTT QTYQTPQQQQ PQPPQQMQQV RHVQQPQNVQ QQQPQPPQQM QQVRHVQQPQ 360 NVQPVMAVPE QQVPPTAQEN IASGGGGGSS EPASSSRWPK AEVLALIKLR SGLESRYQDA 420 GPKGPLWEEI SAGMGRMGYN RSSKRCKEKW ENINKYFKKV KESNKKRPED AKTCPYFHEL 480 DALYRKRVLG GGSTGGSSSS LGNMLEQQPQ QEQVVAASEN KNADDSTNVE TNLRANLFGE 540 GTEEAAKKPE DIVKELMKVH DHQQVLQQGH PQHFGVDDCN RMEEADSDNL MDQEEEDMED 600 EDMDEEDDEE TEQERKMAYK IEFQKQNTGP SSNGGGNGAP SFLAMVQ* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr010171.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK354426 | 2e-45 | AK354426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1007E05. | |||
GenBank | AK361507 | 2e-45 | AK361507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142F04. | |||
GenBank | AK372713 | 2e-45 | AK372713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010E21. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009373707.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like | ||||
Swissprot | Q39117 | 8e-58 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A498I6X3 | 0.0 | A0A498I6X3_MALDO; Uncharacterized protein | ||||
STRING | XP_009373707.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-47 | Trihelix family protein |