PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010139.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 221aa    MW: 24329.6 Da    PI: 10.3888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010139.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-115686236
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkf 36
                 +y+GVr+++ +g+W+AeIrdp   + + +r++l +f
  Pbr010139.1 56 HYRGVRRRP-WGKWAAEIRDP---N-KaARVWLRTF 86
                 69*******.**********9...3.35*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-1855126No hitNo description
PfamPF008472.6E-65686IPR001471AP2/ERF domain
SMARTSM003803.2E-2756131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-155687IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-1556126IPR016177DNA-binding domain
PROSITE profilePS5103220.62656125IPR001471AP2/ERF domain
PRINTSPR003672.4E-135768IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-1097126IPR001471AP2/ERF domain
PRINTSPR003672.4E-13107127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVSALAQVIG NNSDQINNPL DQVQGITSLI TSQSSPTETQ SQPVLLQDQG NLRRQHYRGV  60
RRRPWGKWAA EIRDPNKAAR VWLRTFXXXX XXXXXXTFNT AEAAALAYDG AALRFKGSKA  120
KLNFPERVVQ GSSESGCLTI TTQLHSLNNI PPQANISRPT YSNVFDYARY NNVTSTSSSS  180
MPSQQAAELQ SFSMQFGSSS SSSSVPPCKY RKDFDGSRSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2155128163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-2155131469ATERF1
3gcc_A4e-2155131469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010139.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506769.11e-131PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH548e-42EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A498I7511e-112A0A498I751_MALDO; Uncharacterized protein (Fragment)
STRINGXP_009373701.11e-152(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]