PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009544.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 368aa    MW: 40301.3 Da    PI: 6.8663
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009544.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2262.3e-085177232
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfs 32
                 +y+GVr+++ +g+WvAeIr+p++   r+r +
  Pbr009544.1 51 KYRGVRQRS-WGKWVAEIREPRK---RTRKW 77
                 8*****999.**********954...35555 PP
2AP235.23e-1178120955
          AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +  g+WvAeIr+p++   r+r +lg+f tae+Aa a+ +a+  l+g
  Pbr009544.1  78 LP-AGKWVAEIREPRK---RTRKWLGTFATAEDAAHAYARAAIILYG 120
                  56.6*********954...5*********************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-115078IPR001471AP2/ERF domain
CDDcd000187.09E-1751130No hitNo description
PROSITE profilePS5103220.75851128IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-65178IPR016177DNA-binding domain
SMARTSM003802.0E-3051134IPR001471AP2/ERF domain
PRINTSPR003679.4E-105263IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1577128IPR016177DNA-binding domain
PfamPF008474.6E-579116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-2079128IPR001471AP2/ERF domain
PRINTSPR003679.4E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEEDQHRDSA AEAAPDHHLP QDNSNSNKTT EDNSTTASTA TTEITNNNNR KYRGVRQRSW  60
GKWVAEIREP RKRTRKWLPA GKWVAEIREP RKRTRKWLGT FATAEDAAHA YARAAIILYG  120
SRAQLNLQPS GSSSQNSTRG SSSSASSSTS STQTLRPLLP RPSGFGLTLP YSSSAHPVPL  180
MDSGFVPYGV GLGLGVYHNV AAAAAVAGCG ATSSVRMNQH PHHMLDQDHE YQNNINRLHQ  240
QQQQHQQQQI VVQQFHHQYP ISLSDGSGCD TSTSYLHPNP SHDQYQRQVP HQNNNNQECC  300
SYEDVNSLVG SGLSTPMEVA PGCSDIPMGA VGPMSPLIGP LTSEEECVPG LWDYGDPFFL  360
DFKGLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1450127159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009544.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8601150.0JQ860115.1 Pyrus pyrifolia ABI4 protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018500506.10.0PREDICTED: ethylene-responsive transcription factor ABI4-like
TrEMBLA0A498KMP80.0A0A498KMP8_MALDO; Uncharacterized protein
STRINGXP_009345774.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-13ERF family protein