PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009274.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 367aa    MW: 40283.1 Da    PI: 9.9319
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009274.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.4e-31150208259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D+++WrKYGqK++kgs++pr+YYrCt   gCp++k+ver+ +dpkv+++tYegeH+h+
  Pbr009274.1 150 ADEHSWRKYGQKPIKGSPYPRGYYRCTKVrGCPARKHVERAPDDPKVLIVTYEGEHRHP 208
                  69*************************998****************************8 PP
2WRKY90.99.9e-29296353258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                   D+y+WrKYGqK++kgs++p +YY+C+ a gCp++k+v+++ +dpkv+++tYegeH+h
  Pbr009274.1 296 ADEYTWRKYGQKPIKGSPYPMGYYKCSKArGCPARKHVDQAPDDPKVLIVTYEGEHRH 353
                  69**************************99***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.1E-7118145IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.4E-32136208IPR003657WRKY domain
SuperFamilySSF1182902.22E-26143209IPR003657WRKY domain
PROSITE profilePS5081130.561144210IPR003657WRKY domain
SMARTSM007743.8E-37149209IPR003657WRKY domain
PfamPF031067.4E-27151208IPR003657WRKY domain
PfamPF105331.6E-10260293IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.1E-30283354IPR003657WRKY domain
PROSITE profilePS5081128.438290356IPR003657WRKY domain
SuperFamilySSF1182901.22E-23293354IPR003657WRKY domain
SMARTSM007741.7E-32295355IPR003657WRKY domain
PfamPF031066.7E-25297353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MIIRRWTGAL TAAAGLAVWT DDHTAAADLT VWTDALTAAA DLTVWTDALT DLTVWTDALT  60
AAAGLTVRVF RTTNGAIIDE ITKLLQSPTP IEIAFTDSAK SPLSTLPGKL PGTGPASGSG  120
EYRCSNSKRR KKQVKKTIRV PLISTGDIPA DEHSWRKYGQ KPIKGSPYPR GYYRCTKVRG  180
CPARKHVERA PDDPKVLIVT YEGEHRHPPE KVELGFETTA IIDEITKLLQ SPTPIEIAFT  240
DSAKSPISTL PGKLPGTGST SGSGEYHCSN SKRRKKQVKK TIRVPAISSK MKDIPADEYT  300
WRKYGQKPIK GSPYPMGYYK CSKARGCPAR KHVDQAPDDP KVLIVTYEGE HRHGPEKEEL  360
VLRQRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19147353271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269|PubMed:16623886}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009274.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9960684e-98KJ996068.1 Pyrus x bretschneideri WRKY domain class transcription factor (WRKY16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367965.11e-143PREDICTED: uncharacterized protein LOC103957516 isoform X1
RefseqXP_009367966.11e-143PREDICTED: uncharacterized protein LOC103957516 isoform X1
SwissprotQ0JEE27e-42WRK51_ORYSJ; WRKY transcription factor WRKY51
SwissprotQ9SJA86e-42WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLA0A498HMB13e-67A0A498HMB1_MALDO; Uncharacterized protein
STRINGXP_009367965.11e-142(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3812122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-43WRKY DNA-binding protein 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y,Wang L
    The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
    BMC Evol. Biol., 2005. 5: p. 1
    [PMID:15629062]
  3. Wu KL,Guo ZJ,Wang HH,Li J
    The WRKY family of transcription factors in rice and Arabidopsis and their origins.
    DNA Res., 2005. 12(1): p. 9-26
    [PMID:16106749]
  4. Xie Z, et al.
    Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells.
    Plant J., 2006. 46(2): p. 231-42
    [PMID:16623886]
  5. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  6. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  7. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  8. Hwang SH, et al.
    OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.
    Plant Cell Rep., 2016. 35(9): p. 1975-85
    [PMID:27300023]
  9. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]