PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008476.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 655aa    MW: 73979.5 Da    PI: 6.9055
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008476.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.1e-162778556
                 SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++t eq+++Lee+F+++ +p+ ++re+L ++lgL+ +q+ +WFqN+R++ k
  Pbr008476.1 27 QRHTFEQIQRLEEFFRNCTHPDDDQREQLCRELGLDANQIAFWFQNKRTQNK 78
                 567889******************************************9987 PP
2START79.95.9e-2629040591206
                  EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHH CS
        START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslv 185
                  l  m+ e+  lsp v  Rdf+f+R+++q + g+wvi+dvS + ++     ++++ R   lpSg++ie++ ng+sk+tw+eh  +++++  h l+r l+
  Pbr008476.1 290 LDFMYEEMHILSPFVLpRDFYFLRHCQQIELGTWVIADVSYNFTKGSFVrQPQSWR---LPSGCMIEDMHNGYSKITWIEHLAVDDNTQtHRLYRDLI 384
                  56789999999998855***********************9988877666999999...****************************999******** PP

                  HHHHHHHHHHHHHHTXXXXXX CS
        START 186 ksglaegaktwvatlqrqcek 206
                   s++a ga +w  tlq+ ce+
  Pbr008476.1 385 CSSVAYGAERWIVTLQKMCER 405
                  *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-16874IPR009057Homeodomain-like
SuperFamilySSF466891.5E-15979IPR009057Homeodomain-like
PROSITE profilePS5007115.3052080IPR001356Homeobox domain
SMARTSM003893.7E-102284IPR001356Homeobox domain
PfamPF000462.4E-142778IPR001356Homeobox domain
CDDcd000861.03E-132881No hitNo description
PROSITE profilePS5084825.51207408IPR002913START domain
SuperFamilySSF559617.83E-23208406No hitNo description
CDDcd088755.76E-77211404No hitNo description
SMARTSM002348.4E-7216405IPR002913START domain
Gene3DG3DSA:3.30.530.204.4E-4290367IPR023393START-like domain
PfamPF018527.9E-21291405IPR002913START domain
SuperFamilySSF559611.92E-11421620No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MELPRNHPTS GDGHEASSSR RENKKFQRHT FEQIQRLEEF FRNCTHPDDD QREQLCRELG  60
LDANQIAFWF QNKRTQNKIQ NERAENIALH QLNESIRGEN CLMRETLKNV VCPTCGGASI  120
PEEERQLNLQ RLRQENAYLK QENDKVANLV SKYKGKPLSL IKSLAPVVGS SQNLSPGCSL  180
NHVIARSPPL SLNLTNTAIA YQFNENVKME RALMKDIAAT AMEELIKLFQ INKPVWMKSP  240
TDGRYLLNRD NYNKKFPKAN HFRTSCARVE SSKDSGVVHI SAAYLVDMFL DFMYEEMHIL  300
SPFVLPRDFY FLRHCQQIEL GTWVIADVSY NFTKGSFVRQ PQSWRLPSGC MIEDMHNGYS  360
KITWIEHLAV DDNTQTHRLY RDLICSSVAY GAERWIVTLQ KMCERFHCLM NGCVFGGVVT  420
LPEGKRSLMT LSQRMVKNFC GMLSMAGNLD FPQLSEVDDT GIQVSVHTST EIGQPHGTIV  480
SVATSLWLPL STQTILNFFK DEKTRVQWDV LSNGNPVHEI AYISTGTHPE NRISIIRPFT  540
PTEDNMLILQ ECYIDPLGSF IIYAPVDMQI LNVAVSGEDS SNMSILPSGY MISRDGRPEM  600
GGTCGSLLTV AFHILVSSPT TSKQMNTELV ATVNTLISSN VEKIKVALNC SGLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008476.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0276171e-120AB027617.1 Pyrus pyrifolia gene for UDP-glucose pyrophosphorylase, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367128.20.0PREDICTED: homeobox-leucine zipper protein HDG11-like
TrEMBLA0A498JA400.0A0A498JA40_MALDO; Uncharacterized protein
STRINGXP_009367128.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11