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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr008404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ARF | ||||||||
Protein Properties | Length: 724aa MW: 79394.6 Da PI: 7.8211 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.6e-23 | 114 | 215 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + +++ Pbr008404.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfpkldysADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSIFVNQKKLVAGDSIVFL--RAESGD 207 89****************************996555545..8************************************************..448999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Pbr008404.1 208 LCVGIRRA 215 9****997 PP | |||||||
2 | Auxin_resp | 115 | 6.7e-38 | 289 | 372 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk++ v++a++v++++GmRfkmafetedss++++ +Gt+++v+ ++p+ WpnS+Wr+L+ Pbr008404.1 289 AATMAANGQPFEVVYYPRASTPEFCVKASAVRAAMRVQWCLGMRFKMAFETEDSSRISWfMGTISSVQVANPICWPNSPWRLLQ 372 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-37 | 104 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-29 | 110 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.35E-21 | 113 | 214 | No hit | No description |
Pfam | PF02362 | 2.8E-21 | 114 | 215 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.661 | 114 | 216 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.4E-23 | 114 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.1E-33 | 289 | 372 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.27 | 611 | 691 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MKESEKILDP QLWHACAGGM VHMPPVNSQV FYFPQGHAEH AQSGGGVDFS AASLRIPSLV 60 LCRVAAIKFM ADPETDEVFA KIRMNPIENS EAFATEDGDT EADGSENQEK PGSFAKTLTQ 120 SDANNGGGFS VPRYCAETIF PKLDYSADPP VQTVIAKDVH GEVWKFRHIY RGTPRRHLLT 180 TGWSIFVNQK KLVAGDSIVF LRAESGDLCV GIRRAKRGLD GGGGNEVASG WNTSHSSGGG 240 SGGCVLPYGG FSVFLREEDN KKRNGGGNLS PNGNMRGKGR VRPESVVEAA TMAANGQPFE 300 VVYYPRASTP EFCVKASAVR AAMRVQWCLG MRFKMAFETE DSSRISWFMG TISSVQVANP 360 ICWPNSPWRL LQVTWDEPDL LQNVKCVSPW LIELVSNFPM IHMSPFSSPR KKLRLPQHPD 420 FSLDRQLTLP SFSGNPLGPS SPLCCLPNNT PAGIQGARHA QFRISLSDLH LNNKLQSGLF 480 SSSSQWFDQS SRISNGIRAG HTSSNENLSC LLTMGNSSQN SEKPDNAKKH KFLLFGQPIL 540 TEQQISRSCS SEAVSQLLPG KNSKDGNQDK TKFFFNGSES ALGRQVSLEK STSAGFSWHK 600 DFQATDFDLE TGHCKVFMES EDVGRTLDLS ALCSYEELYR RLANMFEIEK PEMMSHVLYR 660 DVTGAVKQTG VEPFSDFMKT AKRLTIITHP ASESIGRTWI RGMQNAENGL GATNKTGPLS 720 IFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 5e-73 | 11 | 398 | 22 | 358 | Auxin response factor 1 |
4ldw_A | 5e-73 | 11 | 398 | 22 | 358 | Auxin response factor 1 |
4ldw_B | 5e-73 | 11 | 398 | 22 | 358 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr008404.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009367062.1 | 0.0 | PREDICTED: auxin response factor 18 isoform X1 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A498KAT7 | 0.0 | A0A498KAT7_MALDO; Auxin response factor | ||||
STRING | XP_009367062.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Publications ? help Back to Top | |||
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