PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008404.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 724aa    MW: 79394.6 Da    PI: 7.8211
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008404.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.6e-23114215199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ 
  Pbr008404.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfpkldysADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSIFVNQKKLVAGDSIVFL--RAESGD 207
                  89****************************996555545..8************************************************..448999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Pbr008404.1 208 LCVGIRRA 215
                  9****997 PP
2Auxin_resp1156.7e-38289372183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++++FevvY+Prast+eF+vk++ v++a++v++++GmRfkmafetedss++++ +Gt+++v+ ++p+ WpnS+Wr+L+
  Pbr008404.1 289 AATMAANGQPFEVVYYPRASTPEFCVKASAVRAAMRVQWCLGMRFKMAFETEDSSRISWfMGTISSVQVANPICWPNSPWRLLQ 372
                  68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-37104217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-29110221IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-21113214No hitNo description
PfamPF023622.8E-21114215IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661114216IPR003340B3 DNA binding domain
SMARTSM010199.4E-23114216IPR003340B3 DNA binding domain
PfamPF065075.1E-33289372IPR010525Auxin response factor
PROSITE profilePS5174518.27611691IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MKESEKILDP QLWHACAGGM VHMPPVNSQV FYFPQGHAEH AQSGGGVDFS AASLRIPSLV  60
LCRVAAIKFM ADPETDEVFA KIRMNPIENS EAFATEDGDT EADGSENQEK PGSFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PKLDYSADPP VQTVIAKDVH GEVWKFRHIY RGTPRRHLLT  180
TGWSIFVNQK KLVAGDSIVF LRAESGDLCV GIRRAKRGLD GGGGNEVASG WNTSHSSGGG  240
SGGCVLPYGG FSVFLREEDN KKRNGGGNLS PNGNMRGKGR VRPESVVEAA TMAANGQPFE  300
VVYYPRASTP EFCVKASAVR AAMRVQWCLG MRFKMAFETE DSSRISWFMG TISSVQVANP  360
ICWPNSPWRL LQVTWDEPDL LQNVKCVSPW LIELVSNFPM IHMSPFSSPR KKLRLPQHPD  420
FSLDRQLTLP SFSGNPLGPS SPLCCLPNNT PAGIQGARHA QFRISLSDLH LNNKLQSGLF  480
SSSSQWFDQS SRISNGIRAG HTSSNENLSC LLTMGNSSQN SEKPDNAKKH KFLLFGQPIL  540
TEQQISRSCS SEAVSQLLPG KNSKDGNQDK TKFFFNGSES ALGRQVSLEK STSAGFSWHK  600
DFQATDFDLE TGHCKVFMES EDVGRTLDLS ALCSYEELYR RLANMFEIEK PEMMSHVLYR  660
DVTGAVKQTG VEPFSDFMKT AKRLTIITHP ASESIGRTWI RGMQNAENGL GATNKTGPLS  720
IFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A5e-731139822358Auxin response factor 1
4ldw_A5e-731139822358Auxin response factor 1
4ldw_B5e-731139822358Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008404.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367062.10.0PREDICTED: auxin response factor 18 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A498KAT70.0A0A498KAT7_MALDO; Auxin response factor
STRINGXP_009367062.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]