PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pbr008379.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TALE

Protein Properties

Length: 838aa MW: 91728 Da PI: 8.2014

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr008379.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.7e-09	654	691	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Pbr008379.1 654 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 691 564459******************************87 PP
2	BELL	98.4	5.8e-32	503	571	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e q+kkakLl ++eeV +r kqy++q+q+v++sFe vagl sa+pY+ +Al+a+SrhFrcL + i++q+ Pbr008379.1 503 EYQQKKAKLLYMQEEVSRRCKQYHQQMQMVVASFESVAGLSSATPYICMALNAVSRHFRCLTNSIKDQL 571 789***************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.4E-37	402	569	IPR006563	POX domain
Pfam	PF07526	2.9E-40	407	567	IPR006563	POX domain
PROSITE profile	PS50071	11.888	632	695	IPR001356	Homeobox domain
CDD	cd00086	9.34E-11	635	696	No hit	No description
SMART	SM00389	1.2E-7	635	699	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.92E-16	637	700	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-27	638	699	IPR009057	Homeodomain-like
Pfam	PF05920	4.0E-18	652	691	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MQVCASRFGC RQSSKLNSQT TVCGKVSTSS KRVPDKYSRH ESHVAQQSRR DKLRVHQTSS 60 PPHHLDNLAN NSGKLPLHPG LNPHIVQVRN VRNANLLYDP TMFSSEMLDF SINANAPLSA 120 HRITMACHDQ DLGAAQPAGE SQNFGNWRST LNPPQSLDWV NNYTSGYQDV VQSSLANSSA 180 DQISSHHVAQ KHLGGGAMHF SSPSLKYVNT LQDVVTSASQ GTQQDQLEMA SIVHQRIMEN 240 EFVRVPSYGN QSNTLRFNNA SNSWMDRQPI ENRHNWSSGG GGGLEFSTAN SVDEEMRTGM 300 SSDSNQQGLS LSLSSNPPSN KLPVAQLIGS QDLHASTDDD DDHHHALKDL QNSKMGKSSG 360 GYLCSITKPS IISKACGKSH QDIVGNSSTS AYRSTGPLGP FTGYATILKS SKFLKPAQQL 420 LDEFCRVSDS KILKTCEASE RMSGDVSASA SVSISIEAGN ATETEVVAKR NNSGASSSTF 480 YGSTEISSDG GAASISSESF WPEYQQKKAK LLYMQEEVSR RCKQYHQQMQ MVVASFESVA 540 GLSSATPYIC MALNAVSRHF RCLTNSIKDQ LKHTRKALGE EYMSSSVTAA GTAGCCSKGE 600 KNFAKLKYMG LGFQKHNKSG GGSLVGFSEP QQHVWRPQRG LPERSVAILR TWLFEHFLHP 660 YPTDTDKHML ATQTGLSRNQ VSNWFINARV RVWKPMVEEI HILETRGGSL ETGQDPINKD 720 GNSANEGTSS RPNNDHQLSM NVMPDRQLKC LGDAEQRNQD MKRSRLECQV SSSMDGGLMG 780 FVQDQRGGFE AGGLGAVSLT LGLRHGVESA QQQQQLQQHE DQLRRQLGGQ MIRDYVG*

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MQVCASRFGC RQSSKLNSQT TVCGKVSTSS KRVPDKYSRH ESHVAQQSRR DKLRVHQTSS  60
PPHHLDNLAN NSGKLPLHPG LNPHIVQVRN VRNANLLYDP TMFSSEMLDF SINANAPLSA  120
HRITMACHDQ DLGAAQPAGE SQNFGNWRST LNPPQSLDWV NNYTSGYQDV VQSSLANSSA  180
DQISSHHVAQ KHLGGGAMHF SSPSLKYVNT LQDVVTSASQ GTQQDQLEMA SIVHQRIMEN  240
EFVRVPSYGN QSNTLRFNNA SNSWMDRQPI ENRHNWSSGG GGGLEFSTAN SVDEEMRTGM  300
SSDSNQQGLS LSLSSNPPSN KLPVAQLIGS QDLHASTDDD DDHHHALKDL QNSKMGKSSG  360
GYLCSITKPS IISKACGKSH QDIVGNSSTS AYRSTGPLGP FTGYATILKS SKFLKPAQQL  420
LDEFCRVSDS KILKTCEASE RMSGDVSASA SVSISIEAGN ATETEVVAKR NNSGASSSTF  480
YGSTEISSDG GAASISSESF WPEYQQKKAK LLYMQEEVSR RCKQYHQQMQ MVVASFESVA  540
GLSSATPYIC MALNAVSRHF RCLTNSIKDQ LKHTRKALGE EYMSSSVTAA GTAGCCSKGE  600
KNFAKLKYMG LGFQKHNKSG GGSLVGFSEP QQHVWRPQRG LPERSVAILR TWLFEHFLHP  660
YPTDTDKHML ATQTGLSRNQ VSNWFINARV RVWKPMVEEI HILETRGGSL ETGQDPINKD  720
GNSANEGTSS RPNNDHQLSM NVMPDRQLKC LGDAEQRNQD MKRSRLECQV SSSMDGGLMG  780
FVQDQRGGFE AGGLGAVSLT LGLRHGVESA QQQQQLQQHE DQLRRQLGGQ MIRDYVG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	4e-15	641	698	1	58	Homeobox protein Meis1
4xrs_B	4e-15	641	698	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr008379.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009367039.1	0.0	PREDICTED: BEL1-like homeodomain protein 9
TrEMBL	A0A498KB13	0.0	A0A498KB13_MALDO; Uncharacterized protein
STRING	XP_009367039.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3481	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	3e-86	BEL1-like homeodomain 8