PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr008287.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 227aa MW: 25478.8 Da PI: 6.9014 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.1 | 4.7e-14 | 26 | 70 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a +++ + Wk+I +g +t q++s+ qky Pbr008287.1 26 RESWTDEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 70 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-18 | 20 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.897 | 21 | 75 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 9.8E-19 | 24 | 73 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.1E-7 | 24 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-11 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-11 | 26 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.48E-9 | 28 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0032922 | Biological Process | circadian regulation of gene expression | ||||
GO:0043966 | Biological Process | histone H3 acetylation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGTASTPSSD GSGKKVRKPY TITKSRESWT DEEHDKFLEA LQLFDRDWKK IEDFVGSKTV 60 IQIRSHAQKY FLKVQKSGTT AHVPPPRPKR KAAHPYPQKA SKNGLLPLQA SIAYPSSMNA 120 IASTYSPWDE TSFLTNPASD QILLSREEFT NLHGTEGLPD FAEVYSFIGS VFDPETKGHA 180 QKLREMNPIN FETVLLLMRN LSINLSSPDF EQMSFDLPEL DLFSHV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00338 | DAP | Transfer from AT3G09600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr008287.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB627311 | 0.0 | AB627311.1 Malus x domestica mRNA, microsatellite: MEST187, clone: SAM01_15_D05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009342304.1 | 1e-158 | PREDICTED: protein REVEILLE 8 isoform X3 | ||||
Swissprot | Q8RWU3 | 1e-102 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A498K1L7 | 1e-141 | A0A498K1L7_MALDO; Uncharacterized protein | ||||
STRING | XP_009342285.1 | 1e-150 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6735 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.2 | 7e-90 | MYB_related family protein |
Publications ? help Back to Top | |||
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