PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007737.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 233aa    MW: 24675.8 Da    PI: 9.032
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007737.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.65e-39551561101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC ++C++ap f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+aela++
  Pbr007737.1  55 PCGACKFLRRKCISGCIFAPLFSSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELAMV 152
                  7************************989*********************************************************************9 PP

       DUF260  98 keel 101
                  +++l
  Pbr007737.1 153 QTQL 156
                  9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.72554156IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-3855153IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MADQPVQRDH GTSESRRKGT SSGGGGKRAS MEAAMGTTTI NSNAVGSGGG GGAAPCGACK  60
FLRRKCISGC IFAPLFSSDQ GAARFAAVHK VFGASNVSKL LLHIPLNRRH DAVVTISYEA  120
QARLSDPVYG CVSTILALQQ QVASLQAELA MVQTQLINSR FAFASALQIT SQQQQHEQQQ  180
QNMALMLQPA YSNNSSATTN LINMNSFTSN FDIEAAPSSE SRVPLLFAND RY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-39511627115LOB family transfactor Ramosa2.1
5ly0_B1e-39511627115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007737.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366531.11e-171PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV32e-79LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A498IHZ81e-119A0A498IHZ8_MALDO; Uncharacterized protein
STRINGXP_009366531.11e-171(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-60LOB domain-containing protein 20