PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr007673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 373aa MW: 41554.9 Da PI: 8.8471 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.3 | 3.5e-54 | 8 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 lppGfrFhPtdeel+ +yL kkv++++l++ +vi+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ + Pbr007673.1 8 LPPGFRFHPTDEELILHYLVKKVASTPLPV-SVIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVAPsgG 104 79****************************.99***************988899***************************************99889 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g++vg+kk Lvfykgr pkg kt+W+mheyrl Pbr007673.1 105 GQNVGVKKALVFYKGRPPKGIKTNWIMHEYRL 136 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-66 | 6 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.771 | 8 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-27 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MKNPESRLPP GFRFHPTDEE LILHYLVKKV ASTPLPVSVI AEVDIYKFDP WELPAKAAFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA PSGGGQNVGV KKALVFYKGR 120 PPKGIKTNWI MHEYRLPENP NNHTTTNHHH RVMKLKDLSM RLDDWVLCRI YKKSNVGTSA 180 VALPSDQNQE VQEEEDFLHD ILSPSLKSPF TGLDHNMMST SNTSSLKPQK SCSFSNLLDA 240 MDYSLLTSIL ADGQYSIPTG TGFQSTTPNK FSYSCTGSSS IGLDPQLLFN TDISSSSHLL 300 QTLPQYNGLN LPSSAPSTEN RLKRQHSITD DRGVLLCPSK KYVNSNCSFT NTANSFLNQQ 360 LLLSSPSFHF QE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-73 | 8 | 175 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-73 | 8 | 175 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-73 | 8 | 175 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-73 | 8 | 175 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-73 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 5e-73 | 8 | 175 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-73 | 8 | 175 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr007673.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF198115 | 0.0 | KF198115.1 Malus hupehensis NAC domain protein (NAC24) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009366417.1 | 0.0 | PREDICTED: NAC domain-containing protein 18-like | ||||
Swissprot | Q84TD6 | 1e-103 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A498IKA6 | 0.0 | A0A498IKA6_MALDO; Uncharacterized protein | ||||
STRING | XP_009366417.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6621 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-101 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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