PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr007642.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 284aa MW: 32110.7 Da PI: 6.7261 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132.8 | 2.5e-41 | 4 | 141 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.vikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppG+rF Pt+eel+++yL++k++gk+ +++ + +++ v iy+++Pw+Lp+ ++++++w+fF++r+ ++a+g r++r t++gyWkatg+ Pbr007642.1 4 LPPGYRFYPTEEELISFYLQNKLDGKSedlNRVLDrIVPVVYIYEFNPWELPQvsgeVSHEDQEQWFFFIPRQASEARGGRPRRLTTTGYWKATGSPS 101 79*************************665333332578889*********96566433346669********************************* PP NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 +v+s+ ++ +g k+t+ fy grap+g+kt+W+m+ey+ Pbr007642.1 102 TVYSSksnYNRPIGHKRTMGFYIGRAPRGKKTEWMMNEYK 141 ****85544555***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-43 | 3 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.747 | 4 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-21 | 5 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MEDLPPGYRF YPTEEELISF YLQNKLDGKS EDLNRVLDRI VPVVYIYEFN PWELPQVSGE 60 VSHEDQEQWF FFIPRQASEA RGGRPRRLTT TGYWKATGSP STVYSSKSNY NRPIGHKRTM 120 GFYIGRAPRG KKTEWMMNEY KAIEVHADHS NHLSMAASSS NTSSSTPAPT LREEFSLCRV 180 YKKSKCLIRA FDRRPPGIEI TRNPSLIIQA APAQGANHLD HGSTTSNRNP QNMGERTNLS 240 SLESSSSGNH GSQSSQPEQS GSLLMAVDNE AIWDWDELMD NWL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-31 | 4 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-31 | 4 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-31 | 4 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-31 | 4 | 183 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-31 | 4 | 183 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-31 | 4 | 183 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr007642.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009366767.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
TrEMBL | A0A498HY67 | 0.0 | A0A498HY67_MALDO; Uncharacterized protein | ||||
STRING | XP_009366767.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-52 | NAC domain containing protein 90 |