PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007354.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 480aa    MW: 52504.5 Da    PI: 6.945
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007354.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.73.2e-25165221259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +DgynWrKYGqK+vk+ + +rsYYrCt+++C +kk +e++++ ++v+ei+Y+++H+h+
  Pbr007354.1 165 SDGYNWRKYGQKQVKSPQGSRSYYRCTFSECYAKK-IECCDHSGHVIEIVYKSQHTHD 221
                  7********************************98.*********************7 PP
2WRKY98.15.7e-31342398359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ ++ ++v+itY+g H+h+
  Pbr007354.1 342 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKQIETAVDNSSAVIITYKGVHDHD 398
                  9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-20162223IPR003657WRKY domain
SuperFamilySSF1182907.19E-20162223IPR003657WRKY domain
SMARTSM007744.5E-24164222IPR003657WRKY domain
PROSITE profilePS5081117.523165223IPR003657WRKY domain
PfamPF031061.6E-17166221IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.6E-32325400IPR003657WRKY domain
PROSITE profilePS5081131.399335400IPR003657WRKY domain
SuperFamilySSF1182901.83E-27336400IPR003657WRKY domain
SMARTSM007748.4E-36340399IPR003657WRKY domain
PfamPF031064.0E-24342397IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MAEHRESSHA LPAEKLQPRK QEQKEGGDGD EGDDEEGKQR LGEFQPGELE SSVSELRQTQ  60
LETPTAPSTL EVSENDQFAG MQLDSVSQSI DGAELQEKLG LSHQEILASV TNQDIKTPKQ  120
SRTQLTVYPT PFSELSPTSV TQSISSAPSP IPLERRVPHG KTSASDGYNW RKYGQKQVKS  180
PQGSRSYYRC TFSECYAKKI ECCDHSGHVI EIVYKSQHTH DPPQKSICIK ESKLALSAEC  240
VRYSVAAAEH SCRIVNDSEL STSSKEPIQE TPSIPERKRQ SSSDSDDNGD VKIKEEHGDG  300
DEPEPKRRMK KSNSEYSASL SKPGKKPKLV VHAAGDVGIS GDGYRWRKYG QKMVKGNPHP  360
RNYYRCTSAG CPVRKQIETA VDNSSAVIIT YKGVHDHDMP VPKKRHGPPS APLVAAAAPA  420
SMNNLHIKKT DTVPKPISST QWSVDTGGEL TGEALDLGGE KAMESARTLL SIGFELKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-24328400274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366170.10.0PREDICTED: probable WRKY transcription factor 32
SwissprotP595831e-131WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A498KB510.0A0A498KB51_MALDO; Uncharacterized protein
STRINGXP_009366170.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-120WRKY DNA-binding protein 32