PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr007346.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | RAV | ||||||||
Protein Properties | Length: 346aa MW: 39656.7 Da PI: 8.587 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.6 | 2e-10 | 42 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV + +g W A+I+ + r++lg+f +++eAa a++ a+ kl+g Pbr007346.1 42 RFKGVVEQP-NGHWGAQIYA------NhERVWLGTFSSENEAAMAYDSAAIKLRG 89 799997566.8******999......44*************************98 PP | |||||||
2 | B3 | 82.4 | 4.2e-26 | 169 | 259 | 1 | 82 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsdv+k++r+v+p + a+++ ++++ +s +l+++d rsW+++++y+k+s+++v+tkGW++Fvk ++Lk++D+++F Pbr007346.1 169 FQKELTPSDVGKLNRFVIPVSNAKRCfpsmseatsQKVESCSSQLVFYDNMMRSWTFRYCYWKSSRSFVFTKGWSRFVKTHHLKAKDILTF 259 99******************************99999999**************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.93E-23 | 41 | 99 | No hit | No description |
Pfam | PF00847 | 1.8E-6 | 42 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-15 | 42 | 98 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.8E-20 | 42 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.741 | 42 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-18 | 42 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-29 | 166 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-25 | 167 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.76E-23 | 168 | 259 | No hit | No description |
PROSITE profile | PS50863 | 10.983 | 169 | 284 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-19 | 169 | 270 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-23 | 169 | 259 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEEDMSSTVS NKGVKCKTGE VCGQSLATND SADGASRRVS KRFKGVVEQP NGHWGAQIYA 60 NHERVWLGTF SSENEAAMAY DSAAIKLRGC DCHRNFPWTK FTFEEPHFQN QYSKEAVLRM 120 IKDGSYQAEF LEYRKSRAAR ESLRSDIQFG SLARVHNNGN GKMLNRLLFQ KELTPSDVGK 180 LNRFVIPVSN AKRCFPSMSE ATSQKVESCS SQLVFYDNMM RSWTFRYCYW KSSRSFVFTK 240 GWSRFVKTHH LKAKDILTFF QCQYKQLGDN GNKEPQTFYM VKVNWDGVES EDVSCLVEND 300 AKNYQYDNCK LEPVSQNMNE AEGILADQKK RFRLFGVEIC NEVAH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 9e-24 | 168 | 271 | 7 | 101 | B3 domain-containing transcription factor NGA1 |
5os9_B | 9e-24 | 168 | 271 | 7 | 101 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr007346.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028952950.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C688 | 2e-79 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A498KBN2 | 0.0 | A0A498KBN2_MALDO; Uncharacterized protein | ||||
STRING | XP_009366167.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17090 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 8e-82 | RAV family protein |