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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pbr007294.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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| Family |
Dof |
| Protein Properties |
Length: 464aa MW: 50484.2 Da PI: 5.3959 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pbr007294.2 | genome | CPETR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 126.3 | 9.3e-40 | 125 | 185 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s
Pbr007294.2 125 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 185
7899******************************************************976 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 464 aa
Download sequence Send
to blast |
MLETKDPAIK LFGKKISLPA DIEDLGFDRP VEKEVEVELE EECEEEEEDA ETEQDSPSQK 60
STESIEQDDG SQPKSEDPTN LETLPGSVVN PKTPSIDEES AQTKTAQTEK EQSTENSEEK 120
TLKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKACQ RYWTAGGTMR NVPVGAGRRK 180
NKNSASHFRH MTISEALEAA RIDAPNGVHH PALKSNGRVL SFGVDAPICD SMASSLNPAD 240
KKVLNGTRNG LHKSEEQVFP SPCKARDNGD DSSSASSVNV SKPHVQNVNG FSSQIPCLPG 300
VPWPYPWNAA VPPPAFCPPG FPLSFCPAPY WNCGVPGAWN VPWFGPQPAS PSPLSGSNSP 360
TLGKHSRDED ILKPEILEKE EPSRQKNGCV LVPKTLRIDD PSEAAKSSIW ATLGIKNDSI 420
SGGGLFKAFQ SKSDKKKTVS ESSPALRANP AALSRSLNFH ESS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Corrales AR, et al.
Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
Plant Cell Environ., 2017. 40(5): p. 748-764
[PMID:28044345] - Renau-Morata B, et al.
Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions.
Front Plant Sci, 2017. 8: p. 660
[PMID:28515731] - Henriques R, et al.
The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.
New Phytol., 2017. 216(3): p. 854-867
[PMID:28758689]
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