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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr007228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 180aa MW: 20829.5 Da PI: 8.6516 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88.9 | 9.2e-28 | 8 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.a...tk..sgyWk.atgk 88 lp+GfrF Ptdeelv++yL +kv +++++++ i+e+d y+ +P++L +++ +e+ew+fF+++ ++ + ++++r + + g+Wk + g+ Pbr007228.1 8 LPVGFRFMPTDEELVTHYLMNKVLYRPVPAAQEIREIDaaqFYSNHPKNLV-TFSCGEREWFFFIHHGESGH-ASQTSRsSirvVGngLGFWKpKYGS 103 79*************************887666666653338999*****6.777899*******9988765.344444233333344789**889** PP NAM 89 dkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++++++++g+ k +L++++g +a+++++t+W + ey l Pbr007228.1 104 ETPICDEDGHFFASKISLTYFSGrSASHAKRTHWKLVEYYL 144 *********************995678899*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-28 | 3 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.707 | 8 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-15 | 9 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MIIGSNQLPV GFRFMPTDEE LVTHYLMNKV LYRPVPAAQE IREIDAAQFY SNHPKNLVTF 60 SCGEREWFFF IHHGESGHAS QTSRSSIRVV GNGLGFWKPK YGSETPICDE DGHFFASKIS 120 LTYFSGRSAS HAKRTHWKLV EYYLHEHDHV ESNTEEKYQV RRRKWILGRM IRGTDYTGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-12 | 7 | 170 | 14 | 165 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr007228.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016651384.1 | 6e-82 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A498I5K0 | 1e-123 | A0A498I5K0_MALDO; Uncharacterized protein | ||||
STRING | XP_004301123.1 | 3e-59 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14439 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 2e-18 | NAC domain containing protein 32 |