PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007168.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 570aa    MW: 62459.9 Da    PI: 9.0435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007168.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.4e-15262312255
                  HHHHHHHHHHHHHHHHHH.HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsa.feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h++ E+rRR++iN++ f+ Lrel+P++    ++K +Ka+ L ++veYI+ Lq
  Pbr007168.1 262 RSKHSATEQRRRSKINDRqFQMLRELIPHS----DQKRDKASFLLEVVEYIQFLQ 312
                  889*************9768*********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-21257333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15259332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.084260311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-12262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-13262315No hitNo description
SMARTSM003532.8E-10266317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MRPEFPEKLY LTNFLPPLNT LTLVYVISGG YLETHDFLQP LERMGKPCIA KEETSAEIST  60
TEKPPSHAAA QPTTSVEHIL PGGIGTYSIS HISYINQRVP KPEGSPVFTV AQASSSERNV  120
DENSNCSSYA GSGFTLWEES AKNKGKTGKE NVVGERPAGT VRATGVLTGQ WTSSERPAQS  180
SSNNHRGCFS SQSSGQKNMS FREMMKSAAK GSTQEDELDD QEEFVLKKET STTTTNAATP  240
YKGDLRVKAD VKSSDQKANT PRSKHSATEQ RRRSKINDRQ FQMLRELIPH SDQKRDKASF  300
LLEVVEYIQF LQERVNKYEG SYQGWNPDPA KLMPWRNNHK LRESYCDQSR GINGGSAPAL  360
AFAATFDEKP ISVSPAIPGS FAQNPVESDT STETTFKAVD HHPGITSKPM PFPLSMQPNF  420
FTPVRTSGAA AAVPQISPRL PSDAENTSRH QPVLCQTISR TTDGAATREK LKEQELTIEG  480
GRINISSAYS QGLLNTLTQA LQSSGVDLSL ASISVQIELG KRANRRSPIP KSAIKENEIP  540
ISTLGKKHSV IASSEEPERA QKKLKTCRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007168.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337847.10.0PREDICTED: transcription factor BIM1 isoform X1
RefseqXP_009337855.10.0PREDICTED: transcription factor BIM1 isoform X1
TrEMBLA0A498I7B90.0A0A498I7B9_MALDO; Uncharacterized protein
STRINGXP_009337847.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.61e-116bHLH family protein