PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NF-YA

Protein Properties

Length: 349aa MW: 37857.3 Da PI: 8.8551

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr006945.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.6	3.5e-32	172	228	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+Rg+gGrF Pbr006945.1 172 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKVRKPYLHESRHQHAMRRARGTGGRF 228 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.9E-35	170	231	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.201	171	231	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.0E-28	173	228	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-24	174	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	176	196	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.8E-24	205	228	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MQPKNEAENR LHAHPIPPSG VYSEPWWCSA GHNPISPTGT GRNATNSSLL ECPNGGSQSN 60 DGQSLSNDET NEDDDDATKD SHITSPRSAG NYGQDHRNVK HVGSGVPTVR DDCLAQPPQL 120 ELVGHSIACA SNPYQEPYYG GMMAAYGHQP LGYPPFFGMP HARMPLPLEM AQEPVYVNAK 180 QYQGILRRRQ ARAKAELERK LIKVRKPYLH ESRHQHAMRR ARGTGGRFAK KTNGDNSNST 240 RQEKGRGSGP AHSSQSGSSS GSEPFPSDSA ETWNSPNSQR EARGSQVHDA YAAHNYANGS 300 GCYQPHGGLQ ASMYPSYSGK RGEGGDWKGQ QQGNISSNQA SQRRLAIQ*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MQPKNEAENR LHAHPIPPSG VYSEPWWCSA GHNPISPTGT GRNATNSSLL ECPNGGSQSN  60
DGQSLSNDET NEDDDDATKD SHITSPRSAG NYGQDHRNVK HVGSGVPTVR DDCLAQPPQL  120
ELVGHSIACA SNPYQEPYYG GMMAAYGHQP LGYPPFFGMP HARMPLPLEM AQEPVYVNAK  180
QYQGILRRRQ ARAKAELERK LIKVRKPYLH ESRHQHAMRR ARGTGGRFAK KTNGDNSNST  240
RQEKGRGSGP AHSSQSGSSS GSEPFPSDSA ETWNSPNSQR EARGSQVHDA YAAHNYANGS  300
GCYQPHGGLQ ASMYPSYSGK RGEGGDWKGQ QQGNISSNQA SQRRLAIQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-18	172	236	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr006945.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009366099.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1-like
Refseq	XP_009366100.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1-like
Swissprot	Q9LXV5	4e-78	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A498IPB3	0.0	A0A498IPB3_MALDO; Uncharacterized protein
STRING	XP_009366099.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4012	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.3	3e-72	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]