PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006809.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 542aa    MW: 61054 Da    PI: 6.9913
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006809.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.8e-161353343
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 i n+s r+vtf kRrng+lKKA  L +LCd++v+ i++ ++
  Pbr006809.1 13 IPNESSRKVTFRKRRNGLLKKAGDLKTLCDVKVCTIVYEKK 53
                 889**********************************9754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-17164IPR002100Transcription factor, MADS-box
CDDcd002663.38E-19285No hitNo description
PROSITE profilePS5006617.801355IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-18583IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-11525IPR002100Transcription factor, MADS-box
PfamPF003191.8E-171358IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-114061IPR002100Transcription factor, MADS-box
PfamPF119472.3E-50397532IPR021855Protein of unknown function DUF3464
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MGRRKSKLPL ELIPNESSRK VTFRKRRNGL LKKAGDLKTL CDVKVCTIVY EKKSKGKLST  60
AATFPKEFKD VKEIIDKYKS NSSKVKRVQS LGDFYATQTV QVKKEIGKLR SKICEEKYPA  120
WDDRFNAFSA EQMLDLLRNL ENKIVAAHEM HSTMKESKQI VVQEIIPPMA MFQSNQEYSQ  180
MLGLSDQKPS YCSMMMNDDW TQFASTSQTN SNIQYTPSAI ASNSNCKTST WEHDQIFNNN  240
YISAAYGNMD ENATFYNPTQ QQPCMYDSIF SSAASQQRQQ QAVVPSVENP NPIDALPLST  300
VLYEYDHPLS VTMQPSYLEC PISASASASS SGYDQQFGAS QSQNTFYDDV DAKPWSLSIT  360
SSLKEDIKIQ YPISATKQCP NTQKHLNATL RSPRGFGPSP RKKKKITEKP KKMGNNDSDD  420
DDDDDEDEDE EEGEEGVIPE IVTNRMIGRM GFTVGLPLFL GLLFFSFFYY LKVGLKIDVP  480
TWVPFIVSFV FFGTALLGVS YGIVSSSWDP MREGSLLGWT EAQKNWPVFW QSLRGGGSKK  540
D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006809.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365775.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A498JPP00.0A0A498JPP0_MALDO; Uncharacterized protein
STRINGXP_009365775.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-15M-type_MADS family protein