PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006798.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25424.4 Da    PI: 10.3608
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006798.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF421.2e-131252444
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 +n + r+ t  kR++g +KK +E+ +LCd+e++ +++++++
  Pbr006798.1 12 QNRTTRKLTCKKRKKGFMKKMSEITTLCDVEACAVVYGQND 52
                 58999*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.376151IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-18160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-20395IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-131352IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSRKKVKLAY NQNRTTRKLT CKKRKKGFMK KMSEITTLCD VEACAVVYGQ NDTQPEVWPF  60
PSGVQSTYAK LREMPSMEQT KKQLNMETFL RQRIDKTREQ LRKQKKENRK KEMSILMSQC  120
LTGRSLQDLN MGDLNDLGWV VYHTVKEINK KVKKVNDELA WSGSSQVQVV PTSPPPPSIS  180
GEMMNLQQAQ SQVVPMEMTT PEDQQPQQQL AGLGANTGRL SAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYNQNRTTRKLTCKKRK
22125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006798.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365771.11e-165PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A498JP013e-93A0A498JP01_MALDO; Uncharacterized protein
STRINGXP_009365771.11e-165(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-38AGAMOUS-like 80