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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr006693.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 168aa MW: 19683 Da PI: 9.8187 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46 | 6.7e-15 | 12 | 51 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+ r++++ kR+ng +KK +E+ +LCd+ v+ ii+s+ Pbr006693.1 12 IMNDASRKTSYNKRKNGFIKKMHEINILCDVPVCGIIYSP 51 8899***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-16 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.044 | 2 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.78E-24 | 3 | 85 | No hit | No description |
SuperFamily | SSF55455 | 3.66E-20 | 3 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-8 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.9E-14 | 12 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-8 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MAGRKKVKLA YIMNDASRKT SYNKRKNGFI KKMHEINILC DVPVCGIIYS PYESQPVDWP 60 NLLESQHLIT KFRSMPEAER NKKMVTHEMF LKQRIEKQQE KLNNLKKENR EKQIRMLMNQ 120 CLTGRPLTGL DLNDLNDMEC MIKECVTEIV AQIKSRKEEN LAERNQP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr006693.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018505084.1 | 1e-121 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A498K708 | 1e-113 | A0A498K708_MALDO; Uncharacterized protein | ||||
STRING | XP_008355789.1 | 1e-114 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15602 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 9e-32 | AGAMOUS-like 80 |