PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr006376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WRKY | ||||||||
Protein Properties | Length: 222aa MW: 24848.3 Da PI: 9.7347 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.3 | 1.3e-32 | 142 | 200 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Pbr006376.1 142 LDDGYRWRKYGQKAVKNSSYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 200 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.5E-33 | 128 | 200 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-28 | 134 | 201 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.862 | 137 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-38 | 142 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-26 | 143 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEDHHQQHNP PPLTSQLPPL SLPFLLPPPP QNPPLPPPYL FTPSSSSSLM TNPPDLLDID 60 WVSLLSGGTQ AAGWLSHDQI NSFKPMAMVD KNISGSAGTI ISEAADQEEK VGIKRKAGGR 120 MRKAAASRPR FAFHTRSTDD ILDDGYRWRK YGQKAVKNSS YPRSYYRCTH HTCNVKKQVQ 180 RLSKDTSIVV TTYEGIHNHP CEKLMETLTP LLKQMQFLSR F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-25 | 130 | 199 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr006376.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009338781.1 | 1e-166 | PREDICTED: probable WRKY transcription factor 24 | ||||
Refseq | XP_009350324.1 | 1e-166 | PREDICTED: probable WRKY transcription factor 24 | ||||
TrEMBL | A0A498JCT0 | 1e-133 | A0A498JCT0_MALDO; Uncharacterized protein | ||||
STRING | XP_009338781.1 | 1e-165 | (Pyrus x bretschneideri) | ||||
STRING | XP_009350324.1 | 1e-165 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 3e-57 | WRKY DNA-binding protein 56 |