PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006330.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 363aa    MW: 40431.8 Da    PI: 4.771
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006330.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.2e-1990143356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV+vWFqNrRa++k
  Pbr006330.2  90 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVSVWFQNRRARWK 143
                  56689************************************************9 PP
2HD-ZIP_I/II129.31.6e-4189181193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqv vWFqnrRAR+ktkqlE+dy +Lk++yd+lk + + L++++e+L +e+k+
  Pbr006330.2  89 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVSVWFQNRRARWKTKQLERDYGVLKANYDSLKCNYDILQHDNEALLKEIKQ 181
                  69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.04E-1971147IPR009057Homeodomain-like
PROSITE profilePS5007117.89685145IPR001356Homeobox domain
SMARTSM003893.8E-1888149IPR001356Homeobox domain
PfamPF000463.3E-1690143IPR001356Homeobox domain
CDDcd000862.59E-1690146No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2092152IPR009057Homeodomain-like
PRINTSPR000318.2E-6116125IPR000047Helix-turn-helix motif
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PRINTSPR000318.2E-6125141IPR000047Helix-turn-helix motif
PfamPF021834.2E-17145186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGTEGGGEEV GMKEKKDHEA AAAAAEGGTQ SLIMKRLGSS DSLGAMISIC PITDEQSPRN  60
NHVYSREFQS MLEGLDEDGC VEEAGRVSEK KRRLSVEQVK ALEKNFEVEN KLEPERKVKL  120
AQELGLQPRQ VSVWFQNRRA RWKTKQLERD YGVLKANYDS LKCNYDILQH DNEALLKEIK  180
QLKAKFQENT ETTNPSVKEE KLLGKDQSSY RAVHEGSRSP PPPPESSVPE TECKELNFES  240
FNNTSGVLEA VSLFPDFKDG SSDSDSSAIL NEDNSPNLTV SSSGILQNHQ LIKSPASSSL  300
KFNCCSSSLP SSSSMNCFPF QKSYQPSVKV EEHNFFSSEE ACSFFSDEQA PSLQWYCPDQ  360
WN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006330.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6219081e-161AB621908.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH184.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365821.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6 isoform X2
SwissprotP466685e-79ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLA0A498KNY80.0A0A498KNY8_MALDO; Uncharacterized protein
STRINGXP_009365820.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-67homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]