PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006028.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 243aa    MW: 26635.9 Da    PI: 7.4726
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006028.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.3e-20170204135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+ +Tp+WR gp g+ktLCnaCG++y++ +l
  Pbr006028.1 170 CQHCGADETPQWRAGPLGPKTLCNACGVRYKSGRL 204
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.873164200IPR000679Zinc finger, GATA-type
SMARTSM004015.7E-17164214IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-15166227No hitNo description
Gene3DG3DSA:3.30.50.103.3E-15167202IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.97E-15169217No hitNo description
PfamPF003201.6E-17170204IPR000679Zinc finger, GATA-type
PROSITE patternPS003440170195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MESLDSLYDI LDFHSDDAGA EDKAHDFKPS IAPSGVLCAD DPSRPFSQTE EGVEEELEWL  60
SNKDAFPALE TFVDINLLIG QPAGIGTDKH QSPVSVLDNR TTPTTTLMSS CGTLKPPRGA  120
RSKGRRRRES SSFPGILEEH VFWSQSNNCK KDDNTIVKRT TGMATIGRVC QHCGADETPQ  180
WRAGPLGPKT LCNACGVRYK SGRLVPEYRP ASSPTFSSKL HSNSHRKIME MRKQKQGTGM  240
LL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365479.10.0PREDICTED: GATA transcription factor 1
SwissprotQ8LAU91e-47GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A1Q3C8N31e-67A0A1Q3C8N3_CEPFO; GATA domain-containing protein
STRINGXP_009365479.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-46GATA transcription factor 1