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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pbr005854.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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| Family | ARF | ||||||||
| Protein Properties | Length: 876aa MW: 95827.5 Da PI: 4.9645 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 64.4 | 1.8e-20 | 140 | 253 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..............EEETTEEEE-TTHHHHHHHHT--TT-E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy............rkksgryvltkGWkeFvkangLkegDf 79
f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iy + +++r++lt+GW+ Fv a++L++gD+
Pbr005854.1 140 FCKTLTASDTSTHGGFSVPRRAAEKLfppldftMQPP-T-QELVVRDLHDNTWTFRHIYrgenaevfvstsCWQPKRHLLTTGWSLFVGAKRLRAGDS 235
99*********************999*****954444.4.48*****************8888888866665555669999***************** PP
EEEEE-SSSEE..EEEEE-S CS
B3 80 vvFkldgrsefelvvkvfrk 99
v+F ++++ +l+++v+r+
Pbr005854.1 236 VLFI--RDEKSQLLIGVRRA 253
****..4577778****997 PP
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| 2 | Auxin_resp | 111.5 | 8.2e-37 | 278 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++s+F+++YnPra++seFv++++ +++a+ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
Pbr005854.1 278 AAHAAANRSPFTIFYNPRACPSEFVIPLATFQRAVFgTQLSIGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 361
79********************************988*********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 2.75E-44 | 127 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.4E-38 | 133 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.07E-19 | 139 | 252 | No hit | No description |
| SMART | SM01019 | 1.2E-18 | 140 | 254 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 4.4E-18 | 140 | 253 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.28 | 140 | 254 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 4.6E-32 | 278 | 361 | IPR010525 | Auxin response factor |
| SuperFamily | SSF54277 | 1.28E-8 | 752 | 840 | No hit | No description |
| PROSITE profile | PS51745 | 23.591 | 761 | 845 | IPR000270 | PB1 domain |
| Pfam | PF02309 | 4.2E-7 | 806 | 847 | IPR033389 | AUX/IAA domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009725 | Biological Process | response to hormone | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 876 aa Download sequence Send to blast |
MMVSVEEKLK TGCLLDEMKL LKELQDHSGT RKAINSELWH ACAGPLVCLP QVGSLSYYFP 60 QGHSEQVAVS TKRTATSQIP NYPNLPSQLL CQVQNVTLHA DKETDEIYAQ MSLKPVSSER 120 DVFPVPDYGM KPSKHPSEFF CKTLTASDTS THGGFSVPRR AAEKLFPPLD FTMQPPTQEL 180 VVRDLHDNTW TFRHIYRGEN AEVFVSTSCW QPKRHLLTTG WSLFVGAKRL RAGDSVLFIR 240 DEKSQLLIGV RRANRQQTTL PSSVLSADSM HIGVLAAAAH AAANRSPFTI FYNPRACPSE 300 FVIPLATFQR AVFGTQLSIG MRFGMMFETE ESGKRRYMGT IVGISDLDPL RWPGSKWRNL 360 QVEWDEPGCC DKQNRVSSWE IETPESLFIF PSLTSSLKRP MHSGFLGAEA EWGNMTKRSF 420 IRVPEIGNGN SFPYQISNLS ANVDSVDMKA MQAKINQKNP ADGVNANAPF HGIPPGNLNT 480 VAKFGSQAPV GSSTEKTKSE PELSADQLTG QGIEDKLVAG FASPYNIMNQ LTFANQNTSS 540 AQLQTSPRPT QPLDSLLYHS QQTDLPHSDF NGMNSSLPFL DNDECMFYSS CQPFSGALTS 600 PGALSAFGLP DSSTVLTDAN TSSLTSIGQD MWDNSLINSS SLRDLSDESN NQSGIYGCPN 660 VDVGSGLSTV VDPCVSSTIL DDFSTLKNAN FQNSSDCLVK NLSSSQDLQS QITSASLGDS 720 QAFSRQDLAD ASGGTSSSNV ELDESSLLQN SSWHPVVAPM RTYTKVQKTG SVGRSIDVTN 780 FKNYEELCSA IECMFGLEGL LNDPRGSGWK LVYVDYESDV LLVGDDPWEE FVGCVRCIRI 840 LSPTEVQQMS EEGMKLLNSA AMQGMNSTMS EGGRP* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 386 | 1 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Pbr005854.1 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018498243.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A498HSP0 | 0.0 | A0A498HSP0_MALDO; Auxin response factor | ||||
| STRING | XP_009335256.1 | 0.0 | (Pyrus x bretschneideri) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8991 | 32 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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