PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005369.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 186aa    MW: 19476.9 Da    PI: 5.5948
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005369.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26032.82e-105997142
       DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnv 42
                 +C aCk+lr     +C++ap+f ++q +++fa+vhk+FGas  
  Pbr005369.1 59 PCGACKFLRM----KCIFAPHFGSDQgAAHFAVVHKVFGASPP 97
                 7********9....78********9989***********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.0E-85995IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MADQPVQRDH GTSESRGKGT SSGGGGKRAS MEAAMGTTTI NSNASSNVVG SGGGAAAAPC  60
GACKFLRMKC IFAPHFGSDQ GAAHFAVVHK VFGASPPTPF MVVSTILALQ QQVASLQAEL  120
AMVQTQLINS SLLTKMSSFP SNFNIEMAPS SQSFMEPLQI SRPSQDDEDD EEESRVLLLF  180
ANDRY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005369.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353184.13e-70PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV32e-32LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A498IHZ85e-60A0A498IHZ8_MALDO; Uncharacterized protein
STRINGXP_009353184.11e-69(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-17LOB domain-containing protein 20