PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005253.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 485aa    MW: 53161.2 Da    PI: 6.5592
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005253.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.65.1e-28112170160
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  ldDgy+WrKYGqK vkg+ + rsYYrCt+++C+vkk+ver++  +++++++Y geH+h+k
  Pbr005253.2 112 LDDGYHWRKYGQKFVKGKSYVRSYYRCTYPKCEVKKQVERAH-SGQITDTVYFGEHEHPK 170
                  59****************************************.***************85 PP
2WRKY103.61.1e-32283340259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+++d kvv+ tYeg+H+h+
  Pbr005253.2 283 SDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVKKHVERASHDSKVVIATYEGQHDHD 340
                  8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-25105170IPR003657WRKY domain
PROSITE profilePS5081120.954107171IPR003657WRKY domain
SuperFamilySSF1182907.06E-23110170IPR003657WRKY domain
SMARTSM007741.6E-30112170IPR003657WRKY domain
PfamPF031064.7E-23113169IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-35268342IPR003657WRKY domain
SuperFamilySSF1182904.58E-29274342IPR003657WRKY domain
PROSITE profilePS5081135.462277342IPR003657WRKY domain
SMARTSM007741.1E-37282341IPR003657WRKY domain
PfamPF031061.3E-25284339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MIPLGEDGTD KVASDIVQKK ESSDSEIHAP HQAPNKGIYL LQSDHKGTAQ FLTPEKASQV  60
PDGVVTTSQP NQEGSASSLT SEKTPQTPET AALALRSAQE GTTPSTTLKR VLDDGYHWRK  120
YGQKFVKGKS YVRSYYRCTY PKCEVKKQVE RAHSGQITDT VYFGEHEHPK LRSVPVAVSF  180
VVSIVEDERP KVLLLTDVEE KSSNAHGHTS NQIEPVDPPQ LSSVAVTEAM QGVLSQSNRP  240
RGGDPDPKRQ KKAKHNGNSL PVDKPSVEPR MVVQTMSEVD IVSDGYRWRK YGQKLVKGNP  300
NPRSYYRCSN PGCPVKKHVE RASHDSKVVI ATYEGQHDHD MPPTRTVTHN TAASNVFTTA  360
RICESGTIPE GNAVCSDTSP DHEVKPSEQR NDESKIKPSD VAGSDMVVDS DLGPERTLHD  420
QSVAEACTTT ESDPPYMIVC RANKMKTTEM GIKSEGVDMV VCDNLRPESN PPEQEKPKAE  480
PVDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-36107343275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005253.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297567e-45KP229756.1 UNVERIFIED: Boehmeria nivea WRKY transcription factor-like (WRKY27) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365204.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_009365205.10.0PREDICTED: WRKY transcription factor 1
SwissprotQ9SI375e-81WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A498J7C50.0A0A498J7C5_MALDO; Uncharacterized protein
STRINGXP_009365204.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.25e-85zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]