PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004979.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 369aa    MW: 40944.2 Da    PI: 6.9706
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004979.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.4e-18195249256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Pbr004979.1 195 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 249
                  677889***********************************************98 PP
2HD-ZIP_I/II126.21.5e-40195285192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Pbr004979.1 195 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLNKELQELR-ALK 285
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-19182252IPR009057Homeodomain-like
PROSITE profilePS5007116.973191251IPR001356Homeobox domain
SMARTSM003891.9E-16193255IPR001356Homeobox domain
CDDcd000862.92E-16195252No hitNo description
PfamPF000461.3E-15195249IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-17195249IPR009057Homeodomain-like
PROSITE patternPS000270226249IPR017970Homeobox, conserved site
SMARTSM003404.7E-22251297IPR003106Leucine zipper, homeobox-associated
PfamPF021832.0E-10251285IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MELCLSLGDH EALAEPSDQT TTTKTTGFCM NLSIGPSCAA APSPPPPPRD EEADKKQDDD  60
DHHHHIHVDD HTPLQLDLLP WPTSSCNQIQ NAGVLSMNVI NKAQEVVAAA SSSHTNSGSS  120
SFHIMDIGLC SNNNHSKGSA GDGLNNNYHN VYNYKRRAHS AEGQGDDEGE RAYNSRVGSD  180
DDEDDIINGN ANTCRKKLRL SKEQSAFLEE SFKEHHTLNP KQKLALAKQL NLRPRQVEVW  240
FQNRRARTKL KQTEVDCEFL KRCCETLTEE NRRLNKELQE LRALKATHHS NPFYMQSPAT  300
TLTLCPSCER TATTSNAAIN TTNNTYNNNN NKVMSISTTK VQAAKFPLNR PSFYPFFQPK  360
SHPSSAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243251RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004979.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365044.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotP466656e-73HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A498KDN10.0A0A498KDN1_MALDO; Uncharacterized protein
STRINGXP_009365044.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1891346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-58homeobox from Arabidopsis thaliana