PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004761.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 362aa    MW: 38887.9 Da    PI: 4.4464
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004761.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75e-16209245135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Pbr004761.1 209 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 245
                  *******99*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.94269104IPR010399Tify domain
SMARTSM009794.2E-769104IPR010399Tify domain
PfamPF062003.6E-1072103IPR010399Tify domain
PROSITE profilePS5101712.58137179IPR010402CCT domain
PfamPF062031.0E-14137178IPR010402CCT domain
PROSITE profilePS501148.524203251IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-9203256IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-11204254No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14207250IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.73E-16208252No hitNo description
PROSITE patternPS003440209236IPR000679Zinc finger, GATA-type
PfamPF003207.0E-14209245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAAVNPQPLE AGPFEEHGRG PIQVEDDDGD YEDGGDDGME DMEEVHVNPV SVAERGGGGG  60
GGGGGGAGMA SRTSELTLSF EGEVYVFPAV TPEKVQAVLL LLGGRDVPTG VPTVEVSYNQ  120
NPRGVGDTPK RSNLSRRIAS LVRFREKRKE RCFDKKIRYT VRKEVAQRML RKNGQFASLK  180
QTSGASSWDS TQSCLQDGTP QPETVVRRCQ HCGVSENNTP AMRRGPAGPR TLCNACGLMW  240
ANKGTLRDLS KGGRNLTMDN IEPGTPTEVK PSVVEGEFSR NQDERGILDG LSKNVTEGSN  300
DASVNPDDEE CIAFKDLHET AEDLTNSYPM GIVSSANDEQ EPLAELANPA DTDLDITTNF  360
D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004761.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349666.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL79e-71GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A498JEZ90.0A0A498JEZ9_MALDO; Uncharacterized protein
STRINGXP_009349666.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-74ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]