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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr004711.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 174aa MW: 19478.2 Da PI: 4.3119 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.3 | 3.9e-12 | 6 | 46 | 1 | 42 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv 42 lpp frFhP deelv +yL +k++g+++el e+i+evd+yk+ Pbr004711.1 6 LPPRFRFHPMDEELVAYYLDRKINGRTIEL-EIIPEVDLYKF 46 6899**************************.99*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-11 | 3 | 46 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 9.928 | 6 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-7 | 7 | 65 | IPR003441 | NAC domain |
SuperFamily | SSF51230 | 6.15E-32 | 46 | 162 | IPR011053 | Single hybrid motif |
Hamap | MF_00272 | 23.194 | 47 | 161 | IPR002930 | Glycine cleavage system H-protein |
Gene3D | G3DSA:2.40.50.100 | 4.6E-36 | 49 | 163 | No hit | No description |
Pfam | PF01597 | 1.4E-31 | 50 | 162 | IPR002930 | Glycine cleavage system H-protein |
CDD | cd06848 | 1.61E-35 | 52 | 139 | No hit | No description |
PROSITE profile | PS50968 | 18.02 | 66 | 140 | IPR000089 | Biotin/lipoyl attachment |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MAPMSLPPRF RFHPMDEELV AYYLDRKING RTIELEIIPE VDLYKFMESL KYARSHEWAK 60 VDEGKLATVG IADHAQELLG DIIYVKLPDT GVAVTQASSL GSVESVKAST DIKSPVSGNK 120 IEVNEELLSS PGLGWIMKVE MSSRDELDDL MDPDEYYEYV KQKIPNIPEA EIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1dxm_A | 9e-35 | 47 | 163 | 4 | 127 | H PROTEIN |
1dxm_B | 9e-35 | 47 | 163 | 4 | 127 | H PROTEIN |
1hpc_A | 9e-35 | 47 | 163 | 4 | 127 | H PROTEIN OF THE GLYCINE CLEAVAGE SYSTEM |
1hpc_B | 9e-35 | 47 | 163 | 4 | 127 | H PROTEIN OF THE GLYCINE CLEAVAGE SYSTEM |
1htp_A | 9e-35 | 47 | 163 | 4 | 127 | H-PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | The glycine decarboxylase (GDC) or glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr004711.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018501476.1 | 5e-83 | PREDICTED: glycine cleavage system H protein 2, mitochondrial-like | ||||
Swissprot | O82179 | 1e-40 | GCSH2_ARATH; Glycine cleavage system H protein 2, mitochondrial | ||||
TrEMBL | M5X427 | 6e-60 | M5X427_PRUPE; Glycine cleavage system H protein | ||||
STRING | XP_009349589.1 | 1e-120 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 5e-23 | NAC domain containing protein 20 |