PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004690.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 520aa    MW: 57883.5 Da    PI: 6.7422
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004690.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.69.6e-11237293155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  Pbr004690.1 237 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 293
                  57*******************4444.2344336655.7799999*************98 PP
2AP250.74.6e-16336387155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Pbr004690.1 336 SVYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 387
                  78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-8237293IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-14237303IPR016177DNA-binding domain
CDDcd000182.12E-19237303No hitNo description
PROSITE profilePS5103217.438238301IPR001471AP2/ERF domain
SMARTSM003808.1E-23238307IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-12238302IPR001471AP2/ERF domain
PRINTSPR003674.3E-6239250IPR001471AP2/ERF domain
CDDcd000181.03E-10336395No hitNo description
PfamPF008472.2E-10336387IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18336396IPR016177DNA-binding domain
PROSITE profilePS5103219.137337395IPR001471AP2/ERF domain
SMARTSM003806.6E-30337401IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-18337395IPR001471AP2/ERF domain
PRINTSPR003674.3E-6377397IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAPASNWLSF SLMSPMEMLR SSESDQSPFV PYDASSAASP QYFLDNFYAS NGWQTNPKSQ  60
VFFTDGEDQR KQQGQSDSPN LSPFVHPQSH TQHIPKLEDF LGDSSSMVRY SDSQTETQDS  120
SSLTHMYDQS STYFGGDHHH HHQRQEDLKA ITGFQAFSTN SGSEVEDSTS MGRTTQHQQQ  180
LACAEFGGHS IETNGNELGV YNSSCATNAL SLGKKAIVAV DNDGSKKIAD TFGQRTSIYR  240
GVTRHRWTGR YEAHLWDNSC RREGQARKGR QGGYDKEDKA ARAYDLAALK YWGPSATTNF  300
PVSTYSKELE DMQHMTKQEF IASLRRKSSG FSRGASVYRG VTRHHQQGRW QARIGRVAGN  360
KDLYLGTFAT EEEAAEAYDI AAIKFRGINA VTNFEMNRYD VEAIGKSSLP VGGAAKRLKL  420
SLEAEEQRPS VNHDQQHPQC SIGSNINFTS MQPVQSIPCG IPYDAAAANT YYPHLFHQFQ  480
PNYYGASDSA GLNPNVATQM SMMPQQPAEF YIWPNHQSH*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364812.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A498HV020.0A0A498HV02_MALDO; Uncharacterized protein
STRINGXP_009364812.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]