PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004401.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GeBP
Protein Properties Length: 342aa    MW: 39242.2 Da    PI: 5.3601
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004401.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57369.95e-22120208497
       DUF573   4 qrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  +r+ws+eDe+ lL+G++d+  ++++       +++  fy+ +k +++++ sk+ +veK+rrLK+K+++           +f+++hd+ +fels+kiW+
  Pbr004401.2 120 KRVWSKEDELELLRGFLDYYGTRKTritkATAKETALFYDEIKPRLKLECSKTKMVEKLRRLKRKYHNFF---------RFKNAHDNAVFELSHKIWN 208
                  8******************66666545645566999******************************9865.........479***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-20120208IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAWRPLLSWI MSSSSSSSYS SSEYESDYDD DICHHDPGNN NVRQAQKGHN VDDHEDDDDE  60
NDVSYEPHEA EDEDEVEEPK SSSTSDYSFT IYEPRAKRRR IDHANEALTS VQEEKNRRGK  120
RVWSKEDELE LLRGFLDYYG TRKTRITKAT AKETALFYDE IKPRLKLECS KTKMVEKLRR  180
LKRKYHNFFR FKNAHDNAVF ELSHKIWNVE KTRNNCVVES HNNNVMVKRE EDNVAASSSV  240
ADHERPTTSF DENNNVTNVD DNMNNGHDVR GLIVGLAMNP MPLSLRGKMG SGGGGGVGEL  300
VEDEKWRQQQ ILELEAYEKR LDLVQHQVKA ALEELRSKGG A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004401.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350774.20.0probable transcription factor At5g28040
TrEMBLA0A498ILS21e-175A0A498ILS2_MALDO; Uncharacterized protein
STRINGXP_008350774.10.0(Malus domestica)
STRINGXP_008388653.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.27e-21DNA-binding storekeeper protein-related transcriptional regulator