PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr004400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GeBP | ||||||||
Protein Properties | Length: 433aa MW: 46848.7 Da PI: 4.437 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 118.5 | 3.6e-37 | 135 | 233 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqrlw++eDei lLqG++d++a++g+ + ++d+ fy+++k++++++++ksqlveK+rrLKkK+++ +k++sgk++sf+++hdq +fe+s+kiW Pbr004400.1 135 LFQRLWTDEDEIELLQGFLDYTAQRGSrgsHGQNDTALFYDQIKSKLQLDFNKSQLVEKLRRLKKKYRNVLSKIASGKDVSFKSPHDQATFEISRKIW 232 79***********************997634455**************************************************************** PP DUF573 97 g 97 Pbr004400.1 233 S 233 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.8E-35 | 136 | 233 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MAPDQDDVVL PEGDLSSSSQ DDEEEDDVVD EDEEEDDVED DDDVLNDDVI NSASPSTSSA 60 GATDSIPVAI ATATPTVTVA LPARAPPTVP LTLTSVPTTV IANDAVLSSD PKRHPALSSQ 120 PDEKKPAALD DSRRLFQRLW TDEDEIELLQ GFLDYTAQRG SRGSHGQNDT ALFYDQIKSK 180 LQLDFNKSQL VEKLRRLKKK YRNVLSKIAS GKDVSFKSPH DQATFEISRK IWSNIGRIGA 240 DENALDDEDP PSNPNFGSHE IKAEEAAGFA GDKKSTPRSR KRSRIQPRSD EKRPPPPLRG 300 GFVEPSPVIK DNNNSINISN NGGAGGGNNC SNCNVQGLIE ETVKSCLSPL FKELLSNAMG 360 GGLSRGFGGL AFNPIPLSFG GPPMNLNFGG GEVADDKWRK QQILELEVYS KRLELVQNQI 420 KVALDELRSN GG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr004400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009364550.1 | 0.0 | PREDICTED: probable transcription factor At3g04930 | ||||
TrEMBL | A0A498IK99 | 0.0 | A0A498IK99_MALDO; Uncharacterized protein | ||||
STRING | XP_009364550.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 2e-73 | DNA-binding storekeeper protein-related transcriptional regulator |