PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004400.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GeBP
Protein Properties Length: 433aa    MW: 46848.7 Da    PI: 4.437
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004400.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.53.6e-37135233297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                  lfqrlw++eDei lLqG++d++a++g+   + ++d+  fy+++k++++++++ksqlveK+rrLKkK+++  +k++sgk++sf+++hdq +fe+s+kiW
  Pbr004400.1 135 LFQRLWTDEDEIELLQGFLDYTAQRGSrgsHGQNDTALFYDQIKSKLQLDFNKSQLVEKLRRLKKKYRNVLSKIASGKDVSFKSPHDQATFEISRKIW 232
                  79***********************997634455**************************************************************** PP

       DUF573  97 g 97 
                   
  Pbr004400.1 233 S 233
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.8E-35136233IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAPDQDDVVL PEGDLSSSSQ DDEEEDDVVD EDEEEDDVED DDDVLNDDVI NSASPSTSSA  60
GATDSIPVAI ATATPTVTVA LPARAPPTVP LTLTSVPTTV IANDAVLSSD PKRHPALSSQ  120
PDEKKPAALD DSRRLFQRLW TDEDEIELLQ GFLDYTAQRG SRGSHGQNDT ALFYDQIKSK  180
LQLDFNKSQL VEKLRRLKKK YRNVLSKIAS GKDVSFKSPH DQATFEISRK IWSNIGRIGA  240
DENALDDEDP PSNPNFGSHE IKAEEAAGFA GDKKSTPRSR KRSRIQPRSD EKRPPPPLRG  300
GFVEPSPVIK DNNNSINISN NGGAGGGNNC SNCNVQGLIE ETVKSCLSPL FKELLSNAMG  360
GGLSRGFGGL AFNPIPLSFG GPPMNLNFGG GEVADDKWRK QQILELEVYS KRLELVQNQI  420
KVALDELRSN GG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364550.10.0PREDICTED: probable transcription factor At3g04930
TrEMBLA0A498IK990.0A0A498IK99_MALDO; Uncharacterized protein
STRINGXP_009364550.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-73DNA-binding storekeeper protein-related transcriptional regulator